diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..bf39b30 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,21 @@ +repos: +- repo: https://github.com/pre-commit/pre-commit-hooks + rev: v2.3.0 + hooks: + - id: check-yaml + - id: end-of-file-fixer + - id: trailing-whitespace +- repo: https://github.com/psf/black + rev: 24.8.0 + hooks: + - id: black + args: [--line-length=120] +- repo: https://github.com/pre-commit/mirrors-mypy + rev: v1.11.2 + hooks: + - id: mypy +- repo: https://github.com/PyCQA/flake8 + rev: 7.1.1 + hooks: + - id: flake8 + args: [--max-line-length=120] diff --git a/README.md b/README.md index ec1dfa1..26ea4f9 100644 --- a/README.md +++ b/README.md @@ -1,142 +1,61 @@ -
-

multimodal-maestro

- -
+

maestro

- [![version](https://badge.fury.io/py/maestro.svg)](https://badge.fury.io/py/maestro) - [![license](https://img.shields.io/pypi/l/maestro)](https://github.com/roboflow/multimodal-maestro/blob/main/LICENSE) - [![python-version](https://img.shields.io/pypi/pyversions/maestro)](https://badge.fury.io/py/maestro) - [![Gradio](https://img.shields.io/badge/%F0%9F%A4%97%20Hugging%20Face-Spaces-blue)](https://huggingface.co/spaces/Roboflow/SoM) - [![Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/roboflow/multimodal-maestro/blob/develop/cookbooks/multimodal_maestro_gpt_4_vision.ipynb) +

coming: when it's ready...

## 👋 hello -Multimodal-Maestro gives you more control over large multimodal models to get the -outputs you want. With more effective prompting tactics, you can get multimodal models -to do tasks you didn't know (or think!) were possible. Curious how it works? Try our -[HF space](https://huggingface.co/spaces/Roboflow/SoM)! +**maestro** is a tool designed to streamline and accelerate the fine-tuning process for +multimodal models. It provides ready-to-use recipes for fine-tuning popular +vision-language models (VLMs) such as **Florence-2**, **PaliGemma**, and +**Phi-3.5 Vision** on downstream vision-language tasks. ## 💻 install -⚠️ Our package has been renamed to `maestro`. Install the package in a -[**3.11>=Python>=3.8**](https://www.python.org/) environment. +Pip install the supervision package in a +[**Python>=3.8**](https://www.python.org/) environment. ```bash pip install maestro ``` -## 🔌 API +## 🔥 quickstart -🚧 The project is still under construction. The redesigned API is coming soon. +### CLI -![maestro-docs-Snap](https://github.com/roboflow/multimodal-maestro/assets/26109316/a787b7c0-527e-465a-9ca9-d46f4d63ea53) +VLMs can be fine-tuned on downstream tasks directly from the command line with +`maestro` command: -## 🧑‍🍳 prompting cookbooks +```bash +maestro florence2 train --dataset='' --epochs=10 --batch-size=8 +``` -| Description | Colab | -|:----------------------------------------------------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:| -| Prompt LMMs with Multimodal Maestro | [![Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/roboflow/multimodal-maestro/blob/develop/cookbooks/multimodal_maestro_gpt_4_vision.ipynb) | -| Manually annotate ONE image and let GPT-4V annotate ALL of them | [![Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/roboflow/multimodal-maestro/blob/develop/cookbooks/grounding_dino_and_gpt4_vision.ipynb) | +### SDK +Alternatively, you can fine-tune VLMs using the Python SDK, which accepts the same +arguments as the CLI example above: -## 🚀 example +```python +from maestro.trainer.common import MeanAveragePrecisionMetric +from maestro.trainer.models.florence_2 import train, TrainingConfiguration -``` -Find dog. +config = TrainingConfiguration( + dataset='', + epochs=10, + batch_size=8, + metrics=[MeanAveragePrecisionMetric()] +) ->>> The dog is prominently featured in the center of the image with the label [9]. +train(config) ``` -
-👉 read more - -
- -- **load image** - - ```python - import cv2 - - image = cv2.imread("...") - ``` - -- **create and refine marks** - - ```python - import maestro - - generator = maestro.SegmentAnythingMarkGenerator(device='cuda') - marks = generator.generate(image=image) - marks = maestro.refine_marks(marks=marks) - ``` - -- **visualize marks** - - ```python - mark_visualizer = maestro.MarkVisualizer() - marked_image = mark_visualizer.visualize(image=image, marks=marks) - ``` - ![image-vs-marked-image](https://github.com/roboflow/multimodal-maestro/assets/26109316/92951ed2-65c0-475a-9279-6fd344757092) - -- **prompt** - - ```python - prompt = "Find dog." - - response = maestro.prompt_image(api_key=api_key, image=marked_image, prompt=prompt) - ``` - - ``` - >>> "The dog is prominently featured in the center of the image with the label [9]." - ``` - -- **extract related marks** - - ```python - masks = maestro.extract_relevant_masks(text=response, detections=refined_marks) - ``` - - ``` - >>> {'6': array([ - ... [False, False, False, ..., False, False, False], - ... [False, False, False, ..., False, False, False], - ... [False, False, False, ..., False, False, False], - ... ..., - ... [ True, True, True, ..., False, False, False], - ... [ True, True, True, ..., False, False, False], - ... [ True, True, True, ..., False, False, False]]) - ... } - ``` - -
- -![multimodal-maestro](https://github.com/roboflow/multimodal-maestro/assets/26109316/c04f2b18-2a1d-4535-9582-e5d3ec0a926e) - -## 🚧 roadmap - -- [ ] Rewriting the `maestro` API. -- [ ] Update [HF space](https://huggingface.co/spaces/Roboflow/SoM). -- [ ] Documentation page. -- [ ] Add GroundingDINO prompting strategy. -- [ ] CovVLM demo. -- [ ] Qwen-VL demo. - -## 💜 acknowledgement - -- [Set-of-Mark Prompting Unleashes Extraordinary Visual Grounding -in GPT-4V](https://arxiv.org/abs/2310.11441) by Jianwei Yang, Hao Zhang, Feng Li, Xueyan -Zou, Chunyuan Li, Jianfeng Gao. -- [The Dawn of LMMs: Preliminary Explorations with GPT-4V(ision)](https://arxiv.org/abs/2309.17421) -by Zhengyuan Yang, Linjie Li, Kevin Lin, Jianfeng Wang, Chung-Ching Lin, Zicheng Liu, -Lijuan Wang - ## 🦸 contribution -We would love your help in making this repository even better! If you noticed any bug, -or if you have any suggestions for improvement, feel free to open an +We would love your help in making this repository even better! We are especially +looking for contributors with experience in fine-tuning vision-language models (VLMs). +If you notice any bugs or have suggestions for improvement, feel free to open an [issue](https://github.com/roboflow/multimodal-maestro/issues) or submit a [pull request](https://github.com/roboflow/multimodal-maestro/pulls). diff --git a/maestro/cli/__init__.py b/maestro/cli/__init__.py new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/maestro/cli/__init__.py @@ -0,0 +1 @@ + diff --git a/maestro/cli/env.py b/maestro/cli/env.py new file mode 100644 index 0000000..b95525e --- /dev/null +++ b/maestro/cli/env.py @@ -0,0 +1,2 @@ +DISABLE_RECIPE_IMPORTS_WARNINGS_ENV = "DISABLE_RECIPE_IMPORTS_WARNINGS" +DEFAULT_DISABLE_RECIPE_IMPORTS_WARNINGS_ENV = "False" diff --git a/maestro/cli/introspection.py b/maestro/cli/introspection.py new file mode 100644 index 0000000..fc6aef9 --- /dev/null +++ b/maestro/cli/introspection.py @@ -0,0 +1,37 @@ +import os + +import typer + +from maestro.cli.env import DISABLE_RECIPE_IMPORTS_WARNINGS_ENV, \ + DEFAULT_DISABLE_RECIPE_IMPORTS_WARNINGS_ENV +from maestro.cli.utils import str2bool + + +def find_training_recipes(app: typer.Typer) -> None: + try: + from maestro.trainer.models.florence_2.entrypoint import florence_2_app + + app.add_typer(florence_2_app, name="florence2") + except Exception: + _warn_about_recipe_import_error(model_name="Florence 2") + + try: + from maestro.trainer.models.paligemma.entrypoint import paligemma_app + + app.add_typer(paligemma_app, name="paligemma") + except Exception: + _warn_about_recipe_import_error(model_name="PaliGemma") + + +def _warn_about_recipe_import_error(model_name: str) -> None: + disable_warnings = str2bool( + os.getenv( + DISABLE_RECIPE_IMPORTS_WARNINGS_ENV, + DEFAULT_DISABLE_RECIPE_IMPORTS_WARNINGS_ENV, + ) + ) + if disable_warnings: + return None + warning = typer.style("WARNING", fg=typer.colors.RED, bold=True) + message = "🚧 " + warning + f" cannot import recipe for {model_name}" + typer.echo(message) diff --git a/maestro/cli/main.py b/maestro/cli/main.py new file mode 100644 index 0000000..b600e3a --- /dev/null +++ b/maestro/cli/main.py @@ -0,0 +1,15 @@ +import typer + +from maestro.cli.introspection import find_training_recipes + +app = typer.Typer() +find_training_recipes(app=app) + + +@app.command(help="Display information about maestro") +def info(): + typer.echo("Welcome to maestro CLI. Let's train some VLM! 🏋") + + +if __name__ == "__main__": + app() diff --git a/maestro/cli/utils.py b/maestro/cli/utils.py new file mode 100644 index 0000000..0751fef --- /dev/null +++ b/maestro/cli/utils.py @@ -0,0 +1,2 @@ +def str2bool(value: str) -> bool: + return value.lower() in {"y", "t", "yes", "true"} diff --git a/maestro/trainer/__init__.py b/maestro/trainer/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/maestro/trainer/common/__init__.py b/maestro/trainer/common/__init__.py new file mode 100644 index 0000000..0bfe6b2 --- /dev/null +++ b/maestro/trainer/common/__init__.py @@ -0,0 +1 @@ +from maestro.trainer.common.utils.metrics import MeanAveragePrecisionMetric diff --git a/maestro/trainer/common/configuration/__init__.py b/maestro/trainer/common/configuration/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/maestro/trainer/common/configuration/env.py b/maestro/trainer/common/configuration/env.py new file mode 100644 index 0000000..eeb9105 --- /dev/null +++ b/maestro/trainer/common/configuration/env.py @@ -0,0 +1,5 @@ +SEED_ENV = "SEED" +DEFAULT_SEED = "42" +CUDA_DEVICE_ENV = "CUDA_DEVICE" +DEFAULT_CUDA_DEVICE = "cuda:0" +HF_TOKEN_ENV = "HF_TOKEN" diff --git a/maestro/trainer/common/data_loaders/__init__.py b/maestro/trainer/common/data_loaders/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/maestro/trainer/common/data_loaders/datasets.py b/maestro/trainer/common/data_loaders/datasets.py new file mode 100644 index 0000000..b79cfec --- /dev/null +++ b/maestro/trainer/common/data_loaders/datasets.py @@ -0,0 +1,50 @@ +import json +import os +from typing import List, Dict, Any, Tuple + +from PIL import Image +from transformers.pipelines.base import Dataset + + +class JSONLDataset: + def __init__(self, jsonl_file_path: str, image_directory_path: str): + self.jsonl_file_path = jsonl_file_path + self.image_directory_path = image_directory_path + self.entries = self._load_entries() + + def _load_entries(self) -> List[Dict[str, Any]]: + entries = [] + with open(self.jsonl_file_path, "r") as file: + for line in file: + data = json.loads(line) + entries.append(data) + return entries + + def __len__(self) -> int: + return len(self.entries) + + def __getitem__(self, idx: int) -> Tuple[Image.Image, Dict[str, Any]]: + if idx < 0 or idx >= len(self.entries): + raise IndexError("Index out of range") + + entry = self.entries[idx] + image_path = os.path.join(self.image_directory_path, entry["image"]) + try: + image = Image.open(image_path) + return (image, entry) + except FileNotFoundError: + raise FileNotFoundError(f"Image file {image_path} not found.") + + +class DetectionDataset(Dataset): + def __init__(self, jsonl_file_path: str, image_directory_path: str): + self.dataset = JSONLDataset(jsonl_file_path, image_directory_path) + + def __len__(self): + return len(self.dataset) + + def __getitem__(self, idx): + image, data = self.dataset[idx] + prefix = data["prefix"] + suffix = data["suffix"] + return prefix, suffix, image diff --git a/maestro/trainer/common/data_loaders/jsonl.py b/maestro/trainer/common/data_loaders/jsonl.py new file mode 100644 index 0000000..3630e11 --- /dev/null +++ b/maestro/trainer/common/data_loaders/jsonl.py @@ -0,0 +1,31 @@ +from __future__ import annotations + +import random +from typing import List + +from torch.utils.data import Dataset + +from maestro.trainer.common.utils.file_system import read_jsonl + + +class JSONLDataset(Dataset): + # TODO: implementation could be better - avoiding loading + # whole files to memory + + @classmethod + def from_jsonl_file(cls, path: str) -> JSONLDataset: + file_content = read_jsonl(path=path) + random.shuffle(file_content) + return cls(jsons=file_content) + + def __init__(self, jsons: List[dict]): + self.jsons = jsons + + def __getitem__(self, index): + return self.jsons[index] + + def __len__(self): + return len(self.jsons) + + def shuffle(self): + random.shuffle(self.jsons) diff --git a/maestro/trainer/common/utils/__init__.py b/maestro/trainer/common/utils/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/maestro/trainer/common/utils/file_system.py b/maestro/trainer/common/utils/file_system.py new file mode 100644 index 0000000..da8e5a9 --- /dev/null +++ b/maestro/trainer/common/utils/file_system.py @@ -0,0 +1,59 @@ +import json +import os +from glob import glob +from typing import Union, List + + +def read_jsonl(path: str) -> List[dict]: + file_lines = read_file( + path=path, + split_lines=True, + ) + return [json.loads(line) for line in file_lines] + + +def read_file( + path: str, + split_lines: bool = False, + strip_white_spaces: bool = False, + line_separator: str = "\n", +) -> Union[str, List[str]]: + with open(path, "r") as f: + file_content = f.read() + if strip_white_spaces: + file_content = file_content.strip() + if not split_lines: + return file_content + lines = file_content.split(line_separator) + if not strip_white_spaces: + return lines + return [line.strip() for line in lines] + + +def save_json(path: str, content: dict) -> None: + ensure_parent_dir_exists(path=path) + with open(path, "w") as f: + json.dump(content, f, indent=4) + + +def ensure_parent_dir_exists(path: str) -> None: + parent_dir = os.path.dirname(os.path.abspath(path)) + os.makedirs(parent_dir, exist_ok=True) + + +def create_new_run_directory(base_output_dir: str) -> str: + """ + Creates a new numbered directory for the current training run. + + Args: + base_output_dir (str): The base directory where all run directories are stored. + + Returns: + str: The path to the newly created run directory. + """ + base_output_dir = os.path.abspath(base_output_dir) + existing_run_dirs = [d for d in glob(os.path.join(base_output_dir, "*")) if os.path.isdir(d)] + new_run_number = len(existing_run_dirs) + 1 + new_run_dir = os.path.join(base_output_dir, str(new_run_number)) + os.makedirs(new_run_dir, exist_ok=True) + return new_run_dir diff --git a/maestro/trainer/common/utils/leaderboard.py b/maestro/trainer/common/utils/leaderboard.py new file mode 100644 index 0000000..6f381fe --- /dev/null +++ b/maestro/trainer/common/utils/leaderboard.py @@ -0,0 +1,42 @@ +from typing import Dict, Tuple, Optional + + +class CheckpointsLeaderboard: + + def __init__( + self, + max_checkpoints: int, + ): + self._max_checkpoints = max(max_checkpoints, 1) + self._leaderboard: Dict[int, Tuple[str, float]] = {} + + def register_checkpoint(self, epoch: int, path: str, loss: float) -> Tuple[bool, Optional[str]]: + if len(self._leaderboard) < self._max_checkpoints: + self._leaderboard[epoch] = (path, loss) + return True, None + max_loss_key, max_loss_in_leaderboard = None, None + for key, (_, loss) in self._leaderboard.items(): + if max_loss_in_leaderboard is None: + max_loss_key = key + max_loss_in_leaderboard = loss + if loss > max_loss_in_leaderboard: # type: ignore + max_loss_key = key + max_loss_in_leaderboard = loss + if loss >= max_loss_in_leaderboard: # type: ignore + return False, None + to_be_removed, _ = self._leaderboard.pop(max_loss_key) # type: ignore + self._leaderboard[epoch] = (path, loss) + return True, to_be_removed + + def get_best_model(self) -> str: + min_loss_key, min_loss_in_leaderboard = None, None + for key, (_, loss) in self._leaderboard.items(): + if min_loss_in_leaderboard is None: + min_loss_key = key + min_loss_in_leaderboard = loss + if loss < min_loss_in_leaderboard: # type: ignore + min_loss_key = key + min_loss_in_leaderboard = loss + if min_loss_key is None: + raise RuntimeError("Could not retrieve best model") + return self._leaderboard[min_loss_key][0] diff --git a/maestro/trainer/common/utils/metrics.py b/maestro/trainer/common/utils/metrics.py new file mode 100644 index 0000000..0d1fb9b --- /dev/null +++ b/maestro/trainer/common/utils/metrics.py @@ -0,0 +1,319 @@ +from __future__ import annotations + +import base64 +import html +import io +import json +import os +from abc import ABC, abstractmethod +from collections import defaultdict +from typing import Any, Dict, List, Tuple + +import matplotlib.pyplot as plt +import supervision as sv +from PIL import Image +from supervision.metrics.mean_average_precision import MeanAveragePrecision + + +class BaseMetric(ABC): + """ + Abstract base class for custom metrics. Subclasses must implement + the 'describe' and 'compute' methods. + """ + + @abstractmethod + def describe(self) -> List[str]: + """ + Describe the names of the metrics that this class will compute. + + Returns: + List[str]: A list of metric names that will be computed. + """ + pass + + @abstractmethod + def compute(self, targets: List[Any], predictions: List[Any]) -> Dict[str, float]: + """ + Compute the metric based on the targets and predictions. + + Args: + targets (List[Any]): The ground truth. + predictions (List[Any]): The prediction result. + + Returns: + Dict[str, float]: A dictionary of computed metrics with metric names as + keys and their values. + """ + pass + + +class MeanAveragePrecisionMetric(BaseMetric): + """ + A class used to compute the Mean Average Precision (mAP) metric. + """ + + def describe(self) -> List[str]: + """ + Returns a list of metric names that this class will compute. + + Returns: + List[str]: A list of metric names. + """ + return ["map50:95", "map50", "map75"] + + def compute( + self, + targets: List[sv.Detections], + predictions: List[sv.Detections] + ) -> Dict[str, float]: + """ + Computes the mAP metrics based on the targets and predictions. + + Args: + targets (List[sv.Detections]): The ground truth detections. + predictions (List[sv.Detections]): The predicted detections. + + Returns: + Dict[str, float]: A dictionary of computed mAP metrics with metric names as + keys and their values. + """ + result = MeanAveragePrecision().update( + targets=targets, predictions=predictions).compute() + return { + "map50:95": result.map50_95, + "map50": result.map50, + "map75": result.map75 + } + + +class MetricsTracker: + + @classmethod + def init(cls, metrics: List[str]) -> MetricsTracker: + return cls(metrics={metric: [] for metric in metrics}) + + def __init__(self, metrics: Dict[str, List[Tuple[int, int, float]]]): + self._metrics = metrics + + def register(self, metric: str, epoch: int, step: int, value: float) -> None: + self._metrics[metric].append((epoch, step, value)) + + def describe_metrics(self) -> List[str]: + return list(self._metrics.keys()) + + def get_metric_values( + self, + metric: str, + with_index: bool = True, + ) -> list: + if with_index: + return self._metrics[metric] + return [value[2] for value in self._metrics[metric]] + + def as_json( + self, + output_dir: str = None, + filename: str = None + ) -> Dict[str, List[Dict[str, float]]]: + metrics_data = {} + for metric, values in self._metrics.items(): + metrics_data[metric] = [ + {'epoch': epoch, 'step': step, 'value': value} + for epoch, step, value + in values + ] + + if output_dir and filename: + if not os.path.exists(output_dir): + os.makedirs(output_dir) + filepath = os.path.join(output_dir, filename) + with open(filepath, 'w') as file: + json.dump(metrics_data, file, indent=4) + + return metrics_data + + +def aggregate_by_epoch(metric_values: List[Tuple[int, int, float]]) -> Dict[int, float]: + """ + Aggregates metric values by epoch, calculating the average for each epoch. + + Args: + metric_values (List[Tuple[int, int, float]]): A list of tuples containing + (epoch, step, value) for each metric measurement. + + Returns: + Dict[int, float]: A dictionary with epochs as keys and average metric values as values. + """ + epoch_data = defaultdict(list) + for epoch, step, value in metric_values: + epoch_data[epoch].append(value) + avg_per_epoch = { + epoch: sum(values) / len(values) + for epoch, values + in epoch_data.items() + } + return avg_per_epoch + + +def save_metric_plots( + training_tracker: MetricsTracker, + validation_tracker: MetricsTracker, + output_dir: str +): + """ + Saves plots of training and validation metrics over epochs. + + Args: + training_tracker (MetricsTracker): Tracker containing training metrics. + validation_tracker (MetricsTracker): Tracker containing validation metrics. + output_dir (str): Directory to save the generated plots. + + Returns: + None + """ + if not os.path.exists(output_dir): + os.makedirs(output_dir) + + training_metrics = training_tracker.describe_metrics() + validation_metrics = validation_tracker.describe_metrics() + all_metrics = set(training_metrics + validation_metrics) + + for metric in all_metrics: + plt.figure(figsize=(8, 6)) + + if metric in training_metrics: + training_values = training_tracker.get_metric_values( + metric=metric, with_index=True) + training_avg_values = aggregate_by_epoch(training_values) + training_epochs = sorted(training_avg_values.keys()) + training_vals = [training_avg_values[epoch] for epoch in training_epochs] + plt.plot( + training_epochs, + training_vals, + label=f'Training {metric}', + marker='o', + linestyle='-', + color='blue' + ) + + if metric in validation_metrics: + validation_values = validation_tracker.get_metric_values( + metric=metric, with_index=True) + validation_avg_values = aggregate_by_epoch(validation_values) + validation_epochs = sorted(validation_avg_values.keys()) + validation_vals = [ + validation_avg_values[epoch] + for epoch + in validation_epochs + ] + plt.plot( + validation_epochs, + validation_vals, + label=f'Validation {metric}', + marker='o', + linestyle='--', + color='orange' + ) + + plt.title(f'{metric.capitalize()} over Epochs') + plt.xlabel('Epoch') + plt.ylabel(f'{metric.capitalize()} Value') + plt.legend() + plt.grid(True) + plt.savefig(f'{output_dir}/{metric}_plot.png') + plt.close() + + + +def display_results( + prompts: List[str], + expected_responses: List[str], + generated_texts: List[str], + images: List[Image.Image] +) -> None: + """ + Display the results of model inference in IPython environments. + + This function attempts to display the results (prompts, expected responses, + generated texts, and images) in an HTML format if running in an IPython + environment. If not in IPython or if there's an ImportError, it silently passes. + + Args: + prompts (List[str]): List of input prompts. + expected_responses (List[str]): List of expected responses. + generated_texts (List[str]): List of texts generated by the model. + images (List[Image.Image]): List of input images. + + Returns: + None + """ + try: + import IPython + if IPython.get_ipython() is not None: + from IPython.display import display, HTML + html_out = create_html_output(prompts, expected_responses, generated_texts, images) + display(HTML(html_out)) + except ImportError: + pass # Skip visualization if required libraries are not available + + +def create_html_output( + prompts: List[str], + expected_responses: List[str], + generated_texts: List[str], + images: List[Image.Image] +) -> str: + """ + Create an HTML string to display the results of model inference. + + This function generates an HTML string that includes styled divs for each + result, containing the input image, prompt, expected response, and generated text. + + Args: + prompts (List[str]): List of input prompts. + expected_responses (List[str]): List of expected responses. + generated_texts (List[str]): List of texts generated by the model. + images (List[Image.Image]): List of input images. + + Returns: + str: An HTML string containing the formatted results. + """ + html_out = "" + count = min(8, len(images)) # Display up to 8 examples + for i in range(count): + html_out += f""" +
+
+ +
+
+
Prompt: {html.escape(prompts[i])}
+
Expected: {html.escape(expected_responses[i])}
+
Generated: {html.escape(generated_texts[i])}
+
+
+ """ + return html_out + + +def render_inline(image: Image.Image, resize: Tuple[int, int] = (256, 256)) -> str: + """ + Convert an image into an inline HTML string. + + This function takes an image, resizes it, and converts it to a base64-encoded + string that can be used as the source for an HTML img tag. + + Args: + image (Image.Image): The input image to be converted. + resize (Tuple[int, int], optional): The dimensions to resize the image to. + Defaults to (256, 256). + + Returns: + str: A string containing the data URI for the image, ready to be used + in an HTML img tag's src attribute. + """ + image = image.resize(resize) + with io.BytesIO() as buffer: + image.save(buffer, format='jpeg') + image_b64 = base64.b64encode(buffer.getvalue()).decode() + return f"data:image/jpeg;base64,{image_b64}" \ No newline at end of file diff --git a/maestro/trainer/common/utils/reproducibility.py b/maestro/trainer/common/utils/reproducibility.py new file mode 100644 index 0000000..69e6f1f --- /dev/null +++ b/maestro/trainer/common/utils/reproducibility.py @@ -0,0 +1,24 @@ +import os +import random +from typing import Optional + +import torch +import numpy as np + +from maestro.trainer.common.configuration.env import SEED_ENV, DEFAULT_SEED + + +def make_it_reproducible( + seed: Optional[int] = None, + disable_cudnn_benchmark: bool = True, + avoid_non_deterministic_algorithms: bool = True, +) -> None: + if seed is None: + seed = int(os.getenv(SEED_ENV, DEFAULT_SEED)) + random.seed(seed) + torch.manual_seed(seed) + np.random.seed(seed) + if avoid_non_deterministic_algorithms: + torch.use_deterministic_algorithms(True) + if disable_cudnn_benchmark: + torch.backends.cudnn.benchmark = False diff --git a/maestro/trainer/models/__init__.py b/maestro/trainer/models/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/maestro/trainer/models/florence_2/__init__.py b/maestro/trainer/models/florence_2/__init__.py new file mode 100644 index 0000000..77d45b3 --- /dev/null +++ b/maestro/trainer/models/florence_2/__init__.py @@ -0,0 +1 @@ +from maestro.trainer.models.florence_2.core import TrainingConfiguration, train diff --git a/maestro/trainer/models/florence_2/checkpoints.py b/maestro/trainer/models/florence_2/checkpoints.py new file mode 100644 index 0000000..a489f2b --- /dev/null +++ b/maestro/trainer/models/florence_2/checkpoints.py @@ -0,0 +1,119 @@ +import os +from typing import Optional, Tuple + +import torch +from transformers import AutoModelForCausalLM, AutoProcessor + +from maestro.trainer.common.configuration.env import CUDA_DEVICE_ENV, \ + DEFAULT_CUDA_DEVICE + +DEFAULT_FLORENCE2_MODEL_ID = "microsoft/Florence-2-base-ft" +DEFAULT_FLORENCE2_MODEL_REVISION = "refs/pr/20" +DEVICE = torch.device("cpu") \ + if not torch.cuda.is_available() \ + else os.getenv(CUDA_DEVICE_ENV, DEFAULT_CUDA_DEVICE) + + +class CheckpointManager: + """Manages checkpoints for model training. + + This class handles saving and retrieving model checkpoints during training. + + Attributes: + training_dir (str): Directory where checkpoints will be saved. + best_val_loss (float): Best validation loss achieved so far. + latest_checkpoint_dir (str): Directory for the latest checkpoint. + best_checkpoint_dir (str): Directory for the best checkpoint. + """ + + def __init__(self, training_dir: str): + """Initializes the CheckpointManager. + + Args: + training_dir (str): Directory where checkpoints will be saved. + """ + self.training_dir = training_dir + self.best_val_loss = float('inf') + self.latest_checkpoint_dir = os.path.join(training_dir, "checkpoints", "latest") + self.best_checkpoint_dir = os.path.join(training_dir, "checkpoints", "best") + + def save_latest(self, processor: AutoProcessor, model: AutoModelForCausalLM): + """Saves the latest model checkpoint. + + Args: + processor (AutoProcessor): The processor to save. + model (AutoModelForCausalLM): The model to save. + """ + save_model(self.latest_checkpoint_dir, processor, model) + + def save_best(self, processor: AutoProcessor, model: AutoModelForCausalLM, val_loss: float): + """Saves the best model checkpoint if the validation loss improves. + + Args: + processor (AutoProcessor): The processor to save. + model (AutoModelForCausalLM): The model to save. + val_loss (float): The current validation loss. + """ + if val_loss < self.best_val_loss: + self.best_val_loss = val_loss + save_model(self.best_checkpoint_dir, processor, model) + print(f"New best model saved with validation loss: {self.best_val_loss}") + + def get_best_model_path(self): + """Returns the path to the best model checkpoint. + + Returns: + str: Path to the best model checkpoint. + """ + return self.best_checkpoint_dir + + +def save_model( + target_dir: str, + processor: AutoProcessor, + model: AutoModelForCausalLM, +) -> None: + """Saves the model and processor to the specified directory. + + Args: + target_dir (str): Directory where the model and processor will be saved. + processor (AutoProcessor): The processor to save. + model (AutoModelForCausalLM): The model to save. + """ + os.makedirs(target_dir, exist_ok=True) + processor.save_pretrained(target_dir) + model.save_pretrained(target_dir) + + +def load_model( + model_id_or_path: str = DEFAULT_FLORENCE2_MODEL_ID, + revision: str = DEFAULT_FLORENCE2_MODEL_REVISION, + device: torch.device = DEVICE, + cache_dir: Optional[str] = None, +) -> Tuple[AutoProcessor, AutoModelForCausalLM]: + """Loads a Florence-2 model and its associated processor. + + Args: + model_id_or_path: The identifier or path of the model to load. + revision: The specific model revision to use. + device: The device to load the model onto. + cache_dir: Directory to cache the downloaded model files. + + Returns: + A tuple containing the loaded processor and model. + + Raises: + ValueError: If the model or processor cannot be loaded. + """ + processor = AutoProcessor.from_pretrained( + model_id_or_path, + trust_remote_code=True, + revision=revision, + ) + model = AutoModelForCausalLM.from_pretrained( + model_id_or_path, + trust_remote_code=True, + revision=revision, + cache_dir=cache_dir, + ).to(device) + return processor, model diff --git a/maestro/trainer/models/florence_2/core.py b/maestro/trainer/models/florence_2/core.py new file mode 100644 index 0000000..8ef20ce --- /dev/null +++ b/maestro/trainer/models/florence_2/core.py @@ -0,0 +1,423 @@ +import os +from dataclasses import dataclass, field, replace +from typing import List, Literal, Optional, Tuple, Union + +import torch +from peft import LoraConfig, PeftModel, get_peft_model +from torch.optim import Adam, AdamW, Optimizer, SGD +from torch.optim.lr_scheduler import LRScheduler +from torch.utils.data import DataLoader +from tqdm import tqdm +from transformers import AutoModelForCausalLM, AutoProcessor, get_scheduler + +from maestro.trainer.common.utils.file_system import create_new_run_directory +from maestro.trainer.common.utils.metrics import ( + BaseMetric, + MetricsTracker, + display_results, + save_metric_plots, + MeanAveragePrecisionMetric +) +from maestro.trainer.common.utils.reproducibility import make_it_reproducible +from maestro.trainer.models.florence_2.checkpoints import ( + CheckpointManager, + load_model, + DEFAULT_FLORENCE2_MODEL_ID, + DEFAULT_FLORENCE2_MODEL_REVISION, + DEVICE +) +from maestro.trainer.models.florence_2.data_loading import prepare_data_loaders +from maestro.trainer.models.florence_2.metrics import ( + extract_unique_detection_dataset_classes, + postprocess_florence2_output_for_mean_average_precision, + run_predictions, +) +from maestro.trainer.models.paligemma.training import LoraInitLiteral + + +@dataclass(frozen=True) +class TrainingConfiguration: + """Configuration for training a Florence-2 model. + + This class encapsulates all the parameters needed for training a Florence-2 model, + including dataset paths, model specifications, training hyperparameters, and output + settings. + + Attributes: + dataset (str): Path to the dataset used for training. + model_id (str): Identifier for the Florence-2 model. + revision (str): Revision of the model to use. + device (torch.device): Device to use for training. + cache_dir (Optional[str]): Directory to cache the model. + epochs (int): Number of training epochs. + optimizer (Literal["sgd", "adamw", "adam"]): Optimizer to use for training. + lr (float): Learning rate for the optimizer. + lr_scheduler (Literal["linear", "cosine", "polynomial"]): Learning rate + scheduler. + batch_size (int): Batch size for training. + val_batch_size (Optional[int]): Batch size for validation. + num_workers (int): Number of workers for data loading. + val_num_workers (Optional[int]): Number of workers for validation data loading. + lora_r (int): Rank of the LoRA update matrices. + lora_alpha (int): Scaling factor for the LoRA update. + lora_dropout (float): Dropout probability for LoRA layers. + bias (Literal["none", "all", "lora_only"]): Which bias to train. + use_rslora (bool): Whether to use RSLoRA. + init_lora_weights (Union[bool, LoraInitLiteral]): How to initialize LoRA + weights. + output_dir (str): Directory to save output files. + metrics (List[BaseMetric]): List of metrics to track during training. + """ + dataset: str + model_id: str = DEFAULT_FLORENCE2_MODEL_ID + revision: str = DEFAULT_FLORENCE2_MODEL_REVISION + device: torch.device = DEVICE + cache_dir: Optional[str] = None + epochs: int = 10 + optimizer: Literal["sgd", "adamw", "adam"] = "adamw" + lr: float = 1e-5 + lr_scheduler: Literal["linear", "cosine", "polynomial"] = "linear" + batch_size: int = 4 + val_batch_size: Optional[int] = None + num_workers: int = 0 + val_num_workers: Optional[int] = None + lora_r: int = 8 + lora_alpha: int = 8 + lora_dropout: float = 0.05 + bias: Literal["none", "all", "lora_only"] = "none" + use_rslora: bool = True + init_lora_weights: Union[bool, LoraInitLiteral] = "gaussian" + output_dir: str = "./training/florence-2" + metrics: List[BaseMetric] = field(default_factory=list) + + +def train(config: TrainingConfiguration) -> None: + make_it_reproducible(avoid_non_deterministic_algorithms=False) + run_dir = create_new_run_directory( + base_output_dir=config.output_dir, + ) + config = replace( + config, + output_dir=run_dir, + ) + checkpoint_manager = CheckpointManager(run_dir) + + processor, model = load_model( + model_id_or_path=config.model_id, + revision=config.revision, + device=config.device, + cache_dir=config.cache_dir, + ) + train_loader, val_loader, test_loader = prepare_data_loaders( + dataset_location=config.dataset, + train_batch_size=config.batch_size, + processor=processor, + device=config.device, + num_workers=config.num_workers, + test_loaders_workers=config.val_num_workers, + ) + peft_model = prepare_peft_model( + model=model, + r=config.lora_r, + lora_alpha=config.lora_alpha, + lora_dropout=config.lora_dropout, + bias=config.bias, + use_rslora=config.use_rslora, + init_lora_weights=config.init_lora_weights, + revision=config.revision, + ) + training_metrics_tracker = MetricsTracker.init(metrics=["loss"]) + metrics = ["loss"] + for metric in config.metrics: + metrics += metric.describe() + validation_metrics_tracker = MetricsTracker.init(metrics=metrics) + + run_training_loop( + processor=processor, + model=peft_model, + data_loaders=(train_loader, val_loader), + config=config, + training_metrics_tracker=training_metrics_tracker, + validation_metrics_tracker=validation_metrics_tracker, + checkpoint_manager=checkpoint_manager + ) + + save_metric_plots( + training_tracker=training_metrics_tracker, + validation_tracker=validation_metrics_tracker, + output_dir=os.path.join(config.output_dir, "metrics"), + ) + training_metrics_tracker.as_json( + output_dir=os.path.join(config.output_dir, "metrics"), + filename="training.json") + validation_metrics_tracker.as_json( + output_dir=os.path.join(config.output_dir, "metrics"), + filename="validation.json") + + # Log out paths for latest and best checkpoints + print(f"Latest checkpoint saved at: {checkpoint_manager.latest_checkpoint_dir}") + print(f"Best checkpoint saved at: {checkpoint_manager.best_checkpoint_dir}") + + +def prepare_peft_model( + model: AutoModelForCausalLM, + r: int = 8, + lora_alpha: int = 8, + lora_dropout: float = 0.05, + bias: Literal["none", "all", "lora_only"] = "none", + inference_mode: bool = False, + use_rslora: bool = True, + init_lora_weights: Union[bool, LoraInitLiteral] = "gaussian", + revision: str = DEFAULT_FLORENCE2_MODEL_REVISION, +) -> PeftModel: + config = LoraConfig( + r=r, + lora_alpha=lora_alpha, + target_modules=["q_proj", "o_proj", "k_proj", "v_proj", "linear", "Conv2d", "lm_head", "fc2"], + task_type="CAUSAL_LM", + lora_dropout=lora_dropout, + bias=bias, + inference_mode=inference_mode, + use_rslora=use_rslora, + init_lora_weights=init_lora_weights, + revision=revision, + ) + peft_model = get_peft_model(model, config) + peft_model.print_trainable_parameters() + return peft_model.to(model.device) + + +def run_training_loop( + processor: AutoProcessor, + model: PeftModel, + data_loaders: Tuple[DataLoader, Optional[DataLoader]], + config: TrainingConfiguration, + training_metrics_tracker: MetricsTracker, + validation_metrics_tracker: MetricsTracker, + checkpoint_manager: CheckpointManager, +) -> None: + train_loader, val_loader = data_loaders + optimizer = get_optimizer(model=model, config=config) + total_steps = config.epochs * len(train_loader) + lr_scheduler = get_scheduler( + name=config.lr_scheduler, + optimizer=optimizer, + num_warmup_steps=0, + num_training_steps=total_steps, + ) + for epoch in range(config.epochs): + run_training_epoch( + processor=processor, + model=model, + train_loader=train_loader, + val_loader=val_loader, + epoch=epoch + 1, + config=config, + optimizer=optimizer, + lr_scheduler=lr_scheduler, + training_metrics_tracker=training_metrics_tracker, + validation_metrics_tracker=validation_metrics_tracker, + checkpoint_manager=checkpoint_manager + ) + + +def run_training_epoch( + processor: AutoProcessor, + model: PeftModel, + train_loader: DataLoader, + val_loader: Optional[DataLoader], + epoch: int, + config: TrainingConfiguration, + optimizer: Optimizer, + lr_scheduler: LRScheduler, + training_metrics_tracker: MetricsTracker, + validation_metrics_tracker: MetricsTracker, + checkpoint_manager: CheckpointManager, +) -> None: + model.train() + training_losses: List[float] = [] + + with tqdm(total=len(train_loader), desc=f"Epoch {epoch}/{config.epochs}", unit="batch") as pbar: + for step_id, (inputs, answers) in enumerate(train_loader): + input_ids = inputs["input_ids"] + pixel_values = inputs["pixel_values"] + labels = processor.tokenizer( + text=answers, + return_tensors="pt", + padding=True, + return_token_type_ids=False + ).input_ids.to(config.device) + outputs = model(input_ids=input_ids, pixel_values=pixel_values, labels=labels) + loss = outputs.loss + loss.backward() + optimizer.step() + lr_scheduler.step() + optimizer.zero_grad() + loss = loss.item() + training_metrics_tracker.register( + metric="loss", + epoch=epoch, + step=step_id + 1, + value=loss, + ) + training_losses.append(loss) + + # Update progress bar + last_100_losses = training_losses[-100:] + loss_moving_average = sum(last_100_losses) / len(last_100_losses) if last_100_losses else 0.0 + pbar.set_postfix({"Loss": f"{loss_moving_average:.4f}"}) + pbar.update(1) + + # Save checkpoints based on training loss if no validation loader + if val_loader is None or len(val_loader) == 0: + train_loss = sum(training_losses) / len(training_losses) + checkpoint_manager.save_latest(processor, model) + checkpoint_manager.save_best(processor, model, train_loss) + return + + run_validation_epoch( + processor=processor, + model=model, + loader=val_loader, + epoch_number=epoch, + config=config, + metrics_tracker=validation_metrics_tracker, + ) + + val_loss = validation_metrics_tracker.get_metric_values("loss")[-1][2] + checkpoint_manager.save_latest(processor, model) + checkpoint_manager.save_best(processor, model, val_loss) + + +def run_validation_epoch( + processor: AutoProcessor, + model: Union[PeftModel, AutoModelForCausalLM], + loader: DataLoader, + config: TrainingConfiguration, + metrics_tracker: MetricsTracker, + epoch_number: int +) -> None: + val_loss = 0.0 + with torch.no_grad(): + for inputs, targets in loader: + input_ids = inputs["input_ids"] + pixel_values = inputs["pixel_values"] + labels = processor.tokenizer( + text=targets, + return_tensors="pt", + padding=True, + return_token_type_ids=False + ).input_ids.to(config.device) + outputs = model( + input_ids=input_ids, + pixel_values=pixel_values, + labels=labels + ) + loss = outputs.loss + val_loss += loss.item() + avg_val_loss = val_loss / len(loader) + metrics_tracker.register( + metric="loss", + epoch=epoch_number, + step=1, + value=avg_val_loss, + ) + # Run inference once for all metrics + prompts, expected_responses, generated_texts, images = run_predictions( + dataset=loader.dataset, + processor=processor, + model=model, + device=config.device, + ) + + metrics_results = {"loss": avg_val_loss} + + for metric in config.metrics: + if isinstance(metric, MeanAveragePrecisionMetric): + classes = extract_unique_detection_dataset_classes(loader.dataset) + targets, predictions = postprocess_florence2_output_for_mean_average_precision( + expected_responses=expected_responses, + generated_texts=generated_texts, + images=images, + classes=classes, + processor=processor + ) + result = metric.compute(targets=targets, predictions=predictions) + for key, value in result.items(): + metrics_tracker.register( + metric=key, + epoch=epoch_number, + step=1, + value=value, + ) + metrics_results[key] = value + + print("Validation Metrics:", ", ".join([f"{k}: {v:.4f}" for k, v in metrics_results.items()])) + + # Display inference results in IPython environments + display_results(prompts, expected_responses, generated_texts, images) + + +def get_optimizer(model: PeftModel, config: TrainingConfiguration) -> Optimizer: + optimizer_type = config.optimizer.lower() + if optimizer_type == "adamw": + return AdamW(model.parameters(), lr=config.lr) + if optimizer_type == "adam": + return Adam(model.parameters(), lr=config.lr) + if optimizer_type == "sgd": + return SGD(model.parameters(), lr=config.lr) + raise ValueError(f"Unsupported optimizer: {config.optimizer}") + + +def evaluate(config: TrainingConfiguration) -> None: + processor, model = load_model( + model_id_or_path=config.model_id, + revision=config.revision, + device=config.device, + cache_dir=config.cache_dir, + ) + train_loader, val_loader, test_loader = prepare_data_loaders( + dataset_location=config.dataset, + train_batch_size=config.batch_size, + processor=processor, + device=config.device, + num_workers=config.num_workers, + test_loaders_workers=config.val_num_workers, + ) + evaluation_loader = test_loader if test_loader is not None else val_loader + + metrics = [] + for metric in config.metrics: + metrics += metric.describe() + evaluation_metrics_tracker = MetricsTracker.init(metrics=metrics) + + # Run inference once for all metrics + _, expected_responses, generated_texts, images = run_predictions( + dataset=evaluation_loader.dataset, + processor=processor, + model=model, + device=config.device, + ) + + for metric in config.metrics: + if isinstance(metric, MeanAveragePrecisionMetric): + classes = extract_unique_detection_dataset_classes(train_loader.dataset) + targets, predictions = postprocess_florence2_output_for_mean_average_precision( + expected_responses=expected_responses, + generated_texts=generated_texts, + images=images, + classes=classes, + processor=processor + ) + result = metric.compute(targets=targets, predictions=predictions) + for key, value in result.items(): + evaluation_metrics_tracker.register( + metric=key, + epoch=1, + step=1, + value=value, + ) + + evaluation_metrics_tracker.as_json( + output_dir=os.path.join(config.output_dir, "metrics"), + filename="evaluation.json") diff --git a/maestro/trainer/models/florence_2/data_loading.py b/maestro/trainer/models/florence_2/data_loading.py new file mode 100644 index 0000000..4873003 --- /dev/null +++ b/maestro/trainer/models/florence_2/data_loading.py @@ -0,0 +1,110 @@ +import logging +import os +from functools import partial +from typing import Optional, Tuple, List + +import torch +from PIL import Image +from torch.utils.data import DataLoader +from transformers import AutoProcessor + +from maestro.trainer.common.data_loaders.datasets import DetectionDataset + + +def prepare_data_loaders( + dataset_location: str, + train_batch_size: int, + processor: AutoProcessor, + device: torch.device, + num_workers: int = 0, + test_batch_size: Optional[int] = None, + test_loaders_workers: Optional[int] = None, +) -> Tuple[ + DataLoader, + Optional[DataLoader], + Optional[DataLoader], +]: + test_batch_size = test_batch_size or train_batch_size + test_loaders_workers = test_loaders_workers or num_workers + train_data_loader = prepare_detection_data_loader( + dataset_location=dataset_location, + split_name="train", + batch_size=train_batch_size, + processor=processor, + device=device, + num_workers=num_workers, + shuffle=True, + ) + if train_data_loader is None: + raise RuntimeError("Could not initialise train data loader") + valid_data_loader = prepare_detection_data_loader( + dataset_location=dataset_location, + split_name="valid", + batch_size=test_batch_size, + processor=processor, + device=device, + num_workers=test_loaders_workers, + shuffle=False, + ) + test_data_loader = prepare_detection_data_loader( + dataset_location=dataset_location, + split_name="test", + batch_size=test_batch_size, + processor=processor, + device=device, + num_workers=test_loaders_workers, + shuffle=False, + ) + return train_data_loader, valid_data_loader, test_data_loader + + +def prepare_detection_data_loader( + dataset_location: str, + split_name: str, + batch_size: int, + processor: AutoProcessor, + device: torch.device, + num_workers: int = 0, + shuffle: bool = True, +) -> Optional[DataLoader]: + dataset = prepare_detection_dataset( + dataset_location=dataset_location, + split_name=split_name, + ) + if dataset is None: + return None + return DataLoader( + dataset, + batch_size=batch_size, + collate_fn=partial(collate_fn, processor=processor, device=device), + num_workers=num_workers, + shuffle=shuffle, + ) + + +def prepare_detection_dataset( + dataset_location: str, + split_name: str, +) -> Optional[DetectionDataset]: + image_directory_path = os.path.join(dataset_location, split_name) + jsonl_file_path = os.path.join(dataset_location, split_name, "annotations.jsonl") + if not os.path.exists(image_directory_path): + logging.warning(f"Could not data directory: {image_directory_path}") + return None + if not os.path.exists(jsonl_file_path): + logging.warning(f"Could not find JSONL file: {jsonl_file_path}") + return None + return DetectionDataset( + jsonl_file_path=jsonl_file_path, + image_directory_path=image_directory_path, + ) + + +def collate_fn( + batch: Tuple[List[str], List[str], List[Image.Image]], + processor: AutoProcessor, + device: torch.device, +) -> Tuple[torch.Tensor, torch.Tensor]: + questions, answers, images = zip(*batch) + inputs = processor(text=list(questions), images=list(images), return_tensors="pt", padding=True).to(device) + return inputs, answers diff --git a/maestro/trainer/models/florence_2/entrypoint.py b/maestro/trainer/models/florence_2/entrypoint.py new file mode 100644 index 0000000..f18d81e --- /dev/null +++ b/maestro/trainer/models/florence_2/entrypoint.py @@ -0,0 +1,219 @@ +import dataclasses +from typing import Optional, Annotated, List, Dict, Type + +import rich +import torch +import typer + +from maestro.trainer.models.florence_2.checkpoints import DEFAULT_FLORENCE2_MODEL_ID, \ + DEFAULT_FLORENCE2_MODEL_REVISION, DEVICE +from maestro.trainer.models.florence_2.core import TrainingConfiguration +from maestro.trainer.models.florence_2.core import train as florence2_train +from maestro.trainer.models.florence_2.core import evaluate as florence2_evaluate +from maestro.trainer.common.utils.metrics import BaseMetric, MeanAveragePrecisionMetric + +florence_2_app = typer.Typer(help="Fine-tune and evaluate Florence 2 model") + + +METRIC_CLASSES: Dict[str, Type[BaseMetric]] = { + "mean_average_precision": MeanAveragePrecisionMetric, +} + + +def parse_metrics(metrics: List[str]) -> List[BaseMetric]: + metric_objects = [] + for metric_name in metrics: + metric_class = METRIC_CLASSES.get(metric_name.lower()) + if metric_class: + metric_objects.append(metric_class()) + else: + raise ValueError(f"Unsupported metric: {metric_name}") + return metric_objects + + +@florence_2_app.command( + help="Train Florence 2 model", + context_settings={"allow_extra_args": True, "ignore_unknown_options": True} +) +def train( + dataset: Annotated[ + str, + typer.Option("--dataset", help="Path to the dataset used for training"), + ], + model_id: Annotated[ + str, + typer.Option("--model_id", help="Identifier for the Florence-2 model"), + ] = DEFAULT_FLORENCE2_MODEL_ID, + revision: Annotated[ + str, + typer.Option("--revision", help="Revision of the model to use"), + ] = DEFAULT_FLORENCE2_MODEL_REVISION, + device: Annotated[ + str, + typer.Option("--device", help="Device to use for training"), + ] = DEVICE, + cache_dir: Annotated[ + Optional[str], + typer.Option("--cache_dir", help="Directory to cache the model"), + ] = None, + epochs: Annotated[ + int, + typer.Option("--epochs", help="Number of training epochs"), + ] = 10, + optimizer: Annotated[ + str, + typer.Option("--optimizer", help="Optimizer to use for training"), + ] = "adamw", + lr: Annotated[ + float, + typer.Option("--lr", help="Learning rate for the optimizer"), + ] = 1e-5, + lr_scheduler: Annotated[ + str, + typer.Option("--lr_scheduler", help="Learning rate scheduler"), + ] = "linear", + batch_size: Annotated[ + int, + typer.Option("--batch_size", help="Batch size for training"), + ] = 4, + val_batch_size: Annotated[ + Optional[int], + typer.Option("--val_batch_size", help="Batch size for validation"), + ] = None, + num_workers: Annotated[ + int, + typer.Option("--num_workers", help="Number of workers for data loading"), + ] = 0, + val_num_workers: Annotated[ + Optional[int], + typer.Option("--val_num_workers", help="Number of workers for validation data loading"), + ] = None, + lora_r: Annotated[ + int, + typer.Option("--lora_r", help="Rank of the LoRA update matrices"), + ] = 8, + lora_alpha: Annotated[ + int, + typer.Option("--lora_alpha", help="Scaling factor for the LoRA update"), + ] = 8, + lora_dropout: Annotated[ + float, + typer.Option("--lora_dropout", help="Dropout probability for LoRA layers"), + ] = 0.05, + bias: Annotated[ + str, + typer.Option("--bias", help="Which bias to train"), + ] = "none", + use_rslora: Annotated[ + bool, + typer.Option("--use_rslora/--no_use_rslora", help="Whether to use RSLoRA"), + ] = True, + init_lora_weights: Annotated[ + str, + typer.Option("--init_lora_weights", help="How to initialize LoRA weights"), + ] = "gaussian", + output_dir: Annotated[ + str, + typer.Option("--output_dir", help="Directory to save output files"), + ] = "./training/florence-2", + metrics: Annotated[ + List[str], + typer.Option("--metrics", help="List of metrics to track during training"), + ] = [], +) -> None: + metric_objects = parse_metrics(metrics) + config = TrainingConfiguration( + dataset=dataset, + model_id=model_id, + revision=revision, + device=torch.device(device), + cache_dir=cache_dir, + epochs=epochs, + optimizer=optimizer, + lr=lr, + lr_scheduler=lr_scheduler, + batch_size=batch_size, + val_batch_size=val_batch_size, + num_workers=num_workers, + val_num_workers=val_num_workers, + lora_r=lora_r, + lora_alpha=lora_alpha, + lora_dropout=lora_dropout, + bias=bias, + use_rslora=use_rslora, + init_lora_weights=init_lora_weights, + output_dir=output_dir, + metrics=metric_objects + ) + typer.echo(typer.style( + text="Training configuration", + fg=typer.colors.BRIGHT_GREEN, + bold=True + )) + rich.print(dataclasses.asdict(config)) + florence2_train(config=config) + + +@florence_2_app.command(help="Evaluate Florence 2 model") +def evaluate( + dataset: Annotated[ + str, + typer.Option("--dataset", help="Path to the dataset used for evaluation"), + ], + model_id: Annotated[ + str, + typer.Option("--model_id", help="Identifier for the Florence-2 model"), + ] = DEFAULT_FLORENCE2_MODEL_ID, + revision: Annotated[ + str, + typer.Option("--revision", help="Revision of the model to use"), + ] = DEFAULT_FLORENCE2_MODEL_REVISION, + device: Annotated[ + str, + typer.Option("--device", help="Device to use for evaluation"), + ] = DEVICE, + cache_dir: Annotated[ + Optional[str], + typer.Option("--cache_dir", help="Directory to cache the model"), + ] = None, + batch_size: Annotated[ + int, + typer.Option("--batch_size", help="Batch size for evaluation"), + ] = 4, + num_workers: Annotated[ + int, + typer.Option("--num_workers", help="Number of workers for data loading"), + ] = 0, + val_num_workers: Annotated[ + Optional[int], + typer.Option("--val_num_workers", help="Number of workers for validation data loading"), + ] = None, + output_dir: Annotated[ + str, + typer.Option("--output_dir", help="Directory to save output files"), + ] = "./evaluation/florence-2", + metrics: Annotated[ + List[str], + typer.Option("--metrics", help="List of metrics to track during evaluation"), + ] = [], +) -> None: + metric_objects = parse_metrics(metrics) + config = TrainingConfiguration( + dataset=dataset, + model_id=model_id, + revision=revision, + device=torch.device(device), + cache_dir=cache_dir, + batch_size=batch_size, + num_workers=num_workers, + val_num_workers=val_num_workers, + output_dir=output_dir, + metrics=metric_objects + ) + typer.echo(typer.style( + text="Evaluation configuration", + fg=typer.colors.BRIGHT_GREEN, + bold=True + )) + rich.print(dataclasses.asdict(config)) + florence2_evaluate(config=config) diff --git a/maestro/trainer/models/florence_2/metrics.py b/maestro/trainer/models/florence_2/metrics.py new file mode 100644 index 0000000..09e02bd --- /dev/null +++ b/maestro/trainer/models/florence_2/metrics.py @@ -0,0 +1,83 @@ +import re +from typing import List +from typing import Tuple + +import numpy as np +import supervision as sv +import torch +from PIL import Image +from tqdm import tqdm +from transformers import AutoProcessor, AutoModelForCausalLM + +from maestro.trainer.common.data_loaders.datasets import DetectionDataset + +DETECTION_CLASS_PATTERN = r"([a-zA-Z0-9 -]+)" + + +def postprocess_florence2_output_for_mean_average_precision( + expected_responses: List[str], + generated_texts: List[str], + images: List[Image.Image], + classes: List[str], + processor: AutoProcessor +) -> Tuple[List[sv.Detections], List[sv.Detections]]: + targets = [] + predictions = [] + + for image, suffix, generated_text in zip(images, expected_responses, generated_texts): + # Postprocess prediction for mean average precision calculation + prediction = processor.post_process_generation(generated_text, task="", image_size=image.size) + prediction = sv.Detections.from_lmm(sv.LMM.FLORENCE_2, prediction, resolution_wh=image.size) + prediction = prediction[np.isin(prediction["class_name"], classes)] + prediction.class_id = np.array([classes.index(class_name) for class_name in prediction["class_name"]]) + # Set confidence for mean average precision calculation + prediction.confidence = np.ones(len(prediction)) + + # Postprocess target for mean average precision calculation + target = processor.post_process_generation(suffix, task="", image_size=image.size) + target = sv.Detections.from_lmm(sv.LMM.FLORENCE_2, target, resolution_wh=image.size) + target.class_id = np.array([classes.index(class_name) for class_name in target["class_name"]]) + + targets.append(target) + predictions.append(prediction) + + return targets, predictions + + +def run_predictions( + dataset: DetectionDataset, + processor: AutoProcessor, + model: AutoModelForCausalLM, + device: torch.device, +) -> Tuple[List[str], List[str], List[str], List[Image.Image]]: + prompts = [] + expected_responses = [] + generated_texts = [] + images = [] + + for idx in tqdm(list(range(len(dataset))), desc="Generating predictions..."): + image, data = dataset.dataset[idx] + prefix = data["prefix"] + suffix = data["suffix"] + + inputs = processor(text=prefix, images=image, return_tensors="pt").to(device) + generated_ids = model.generate( + input_ids=inputs["input_ids"], pixel_values=inputs["pixel_values"], max_new_tokens=1024, num_beams=3 + ) + generated_text = processor.batch_decode(generated_ids, skip_special_tokens=False)[0] + + prompts.append(prefix) + expected_responses.append(suffix) + generated_texts.append(generated_text) + images.append(image) + + return prompts, expected_responses, generated_texts, images + + +def extract_unique_detection_dataset_classes(dataset: DetectionDataset) -> List[str]: + class_set = set() + for i in range(len(dataset)): + _, suffix, _ = dataset[i] + classes = re.findall(DETECTION_CLASS_PATTERN, suffix) + class_set.update(classes) + return sorted(class_set) diff --git a/maestro/trainer/models/paligemma/__init__.py b/maestro/trainer/models/paligemma/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/maestro/trainer/models/paligemma/entrypoint.py b/maestro/trainer/models/paligemma/entrypoint.py new file mode 100644 index 0000000..6ef6dc6 --- /dev/null +++ b/maestro/trainer/models/paligemma/entrypoint.py @@ -0,0 +1,13 @@ +import typer + +paligemma_app = typer.Typer(help="Fine-tune and evaluate PaliGemma model") + + +@paligemma_app.command(help="Train PaliGemma model") +def train() -> None: + typer.echo("🚧 Just a placeholder - to be implemented 🚧") + + +@paligemma_app.command(help="Evaluate PaliGemma model") +def evaluate() -> None: + typer.echo("🚧 Just a placeholder - to be implemented 🚧") diff --git a/maestro/trainer/models/paligemma/training.py b/maestro/trainer/models/paligemma/training.py new file mode 100644 index 0000000..9de0f0c --- /dev/null +++ b/maestro/trainer/models/paligemma/training.py @@ -0,0 +1,222 @@ +import os +from typing import List, Tuple, Optional, Literal, Union, Iterator + +from PIL import Image +from torch import optim +from torch.optim import Optimizer +from torch.optim.lr_scheduler import LRScheduler +from tqdm import tqdm +from transformers import AutoProcessor, PaliGemmaForConditionalGeneration +import torch +from peft import LoraConfig, get_peft_model, PeftModel + +from maestro.trainer.common.configuration.env import ( + CUDA_DEVICE_ENV, + DEFAULT_CUDA_DEVICE, + HF_TOKEN_ENV, +) +from maestro.trainer.common.data_loaders.jsonl import JSONLDataset +from maestro.trainer.common.utils.metrics import MetricsTracker +from maestro.trainer.common.utils.reproducibility import make_it_reproducible + +DEFAULT_PALIGEMMA_MODEL_ID = "google/paligemma-3b-pt-224" +DEVICE = torch.device("cpu") if not torch.cuda.is_available() else os.getenv(CUDA_DEVICE_ENV, DEFAULT_CUDA_DEVICE) + +LoraInitLiteral = Literal["gaussian", "olora", "pissa", "pissa_niter_[number of iters]", "loftq"] + + +def train( + model: PaliGemmaForConditionalGeneration, + processor: AutoProcessor, + train_dataset: JSONLDataset, + dataset_root: str, + batch_size: int, + epochs: int, + learning_rate: float, + device: torch.device = DEVICE, +) -> MetricsTracker: + make_it_reproducible() + if device.type == "cup": + raise RuntimeError("PaliGemma training process requires GPU") + metrics_tracker = MetricsTracker.init(metrics=["loss"]) + peft_model = prepare_peft_model(model=model).train() + train_steps = len(train_dataset) // batch_size + with torch.amp.autocast(device.type, torch.float16): + lora_layers = filter(lambda p: p.requires_grad, peft_model.parameters()) + optimizer = optim.SGD(lora_layers, lr=learning_rate) + scheduler = optim.lr_scheduler.CosineAnnealingLR( + optimizer, + epochs * train_steps + 1, + eta_min=learning_rate / 10, + ) + run_training_epochs( + peft_model=peft_model, + processor=processor, + epochs=epochs, + train_steps=train_steps, + train_dataset=train_dataset, + batch_size=batch_size, + dataset_root=dataset_root, + optimizer=optimizer, + scheduler=scheduler, + metrics_tracker=metrics_tracker, + ) + return metrics_tracker + + +def run_training_epochs( + peft_model: PeftModel, + processor: AutoProcessor, + epochs: int, + train_steps: int, + train_dataset: JSONLDataset, + batch_size: int, + dataset_root: str, + optimizer: Optimizer, + scheduler: LRScheduler, + metrics_tracker: MetricsTracker, +) -> None: + for epoch in tqdm(range(epochs), desc="EPOCHS"): + train_dataset.shuffle() + dataset_iterator = iter(train_dataset) + progress_bar = tqdm(range(train_steps), desc="STEPS") + run_training_steps( + peft_model=peft_model, + processor=processor, + epoch=epoch, + train_steps=train_steps, + batch_size=batch_size, + dataset_iterator=dataset_iterator, + dataset_root=dataset_root, + optimizer=optimizer, + scheduler=scheduler, + metrics_tracker=metrics_tracker, + progress_bar=progress_bar, + ) + + +def run_training_steps( + peft_model: PeftModel, + processor: AutoProcessor, + epoch: int, + train_steps: int, + batch_size: int, + dataset_iterator: Iterator[dict], + dataset_root: str, + optimizer: Optimizer, + scheduler: LRScheduler, + metrics_tracker: MetricsTracker, + progress_bar, +) -> None: + for step in range(1, train_steps + 1): + batch = collect_batch( + batch_size=batch_size, + dataset_iterator=dataset_iterator, + dataset_root=dataset_root, + processor=processor, + ) + loss_tensor = peft_model(**batch)["loss"] + loss_tensor.backward() + loss = loss_tensor.cpu().detach().numpy() + optimizer.step() + optimizer.zero_grad() + scheduler.step() + progress_bar.update(1) + progress_bar.set_description(f"Loss: {loss}") + metrics_tracker.register(metric="loss", epoch=epoch, step=step, value=loss) + + +def collect_batch( + batch_size: int, + dataset_iterator: Iterator[dict], + dataset_root: str, + processor: AutoProcessor, +) -> torch.Tensor: + with torch.no_grad(): + examples = [] + for _ in range(batch_size): + examples.append(next(dataset_iterator)) + return _collate_fn( + examples=examples, + dataset_root=dataset_root, + processor=processor, + ) + + +def load_model( + model_id: str = DEFAULT_PALIGEMMA_MODEL_ID, + revision: str = "float16", + device: torch.device = DEVICE, + hf_token: Optional[str] = None, + cache_dir: Optional[str] = None, +) -> Tuple[AutoProcessor, PaliGemmaForConditionalGeneration]: + if hf_token is None: + hf_token = os.getenv(HF_TOKEN_ENV) + processor = AutoProcessor.from_pretrained(model_id, token=hf_token, cache_dir=cache_dir) + model = PaliGemmaForConditionalGeneration.from_pretrained( + model_id, + revision=revision, + device_map=device, + cache_dir=cache_dir, + token=hf_token, + torch_dtype=torch.float16, + ).eval() + return processor, model + + +def prepare_peft_model( + model: PaliGemmaForConditionalGeneration, + r: int = 12, + lora_alpha: int = 12, + lora_dropout: float = 0.05, + bias: Literal["none", "all", "lora_only"] = "none", + inference_mode: bool = False, + use_rslora: bool = True, + init_lora_weights: Union[bool, LoraInitLiteral] = "gaussian", + revision: str = "float16", + device: torch.device = DEVICE, +) -> PeftModel: + config = LoraConfig( + r=r, + lora_alpha=lora_alpha, + target_modules=["q_proj", "o_proj", "k_proj", "v_proj", "linear"], + task_type="CAUSAL_LM", + lora_dropout=lora_dropout, + bias=bias, + inference_mode=inference_mode, + use_rslora=use_rslora, + init_lora_weights=init_lora_weights, + revision=revision, + ) + return get_peft_model(model, config).to(device) + + +def _collate_fn( + examples: List[dict], + dataset_root: str, + processor: AutoProcessor, + device: torch.device = DEVICE, + image_file_key: str = "image", + prefix_key: str = "prefix", + suffix_key: str = "suffix", +) -> torch.Tensor: + images = [ + _load_image_from_dataset( + image_name=example[image_file_key], + dataset_root=dataset_root, + ) + for example in examples + ] + tokens = processor( + text=[example[prefix_key] for example in examples], + suffix=[example[suffix_key] for example in examples], + images=images, + return_tensors="pt", + padding="longest", + ) + return tokens.to(device) + + +def _load_image_from_dataset(image_name: str, dataset_root: str) -> Image.Image: + image_path = os.path.join(dataset_root, "dataset", image_name) + return Image.open(image_path).convert("RGB") diff --git a/mypy.ini b/mypy.ini new file mode 100644 index 0000000..61a34b0 --- /dev/null +++ b/mypy.ini @@ -0,0 +1,2 @@ +[mypy-requests] +ignore_missing_imports = True diff 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Language :: Python :: 3", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3 :: Only", + "Topic :: Software Development", + "Topic :: Scientific/Engineering", + "Topic :: Scientific/Engineering :: Artificial Intelligence", + "Typing :: Typed", + "Operating System :: Microsoft :: Windows", + "Operating System :: POSIX :: Linux", + "Operating System :: MacOS", + ], + python_requires=">=3.9,<3.13", +)