ci.yml

name: gsflow continuous integration

on:
  push:
    branches: [master, develop]
  pull_request:
    branches: [master, develop]
    
jobs:
  pygsflowCI:
    name: autotests
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest]
        python-version: [3.8, "3.10"]
        run-type: [std]
        test-pth: ["./autotest"]
    defaults:
      run:
        shell: bash
    steps:
    - name: Checkout pygsflow repo
      uses: actions/checkout@v2.3.4

    - name: Get branch name
      uses: nelonoel/branch-name@v1.0.1

    - name: Cache Miniconda
      uses: actions/cache@v2.1.0
      env:
        # Increase this value to reset cache if environment.yml has changed
        CACHE_NUMBER: 0
      with:
        path: ~/conda_pkgs_dir
        key: ${{ runner.os }}-${{ matrix.python-version }}-${{ matrix.run-type }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('etc/environment.yml') }}

    - name: Setup Miniconda
      uses: conda-incubator/setup-miniconda@v2.0.0
      with:
        python-version: ${{ matrix.python-version }}
        mamba-version: "*"
        channels: conda-forge
        auto-update-conda: true
        activate-environment: pygsflow
        use-only-tar-bz2: true

    - name: Add packages to pygsflow environment using mamba or conda
      shell: bash -l {0}
      run: |
        if [ "$RUNNER_OS" == "Windows" ]; then
          conda env update --name pygsflow --file etc/environment.yml
        else
          mamba env update --name pygsflow --file etc/environment.yml
        fi

    - name: Install pymake, flopy, and pygsflow
      shell: bash -l {0}
      run: |
        pip install https://github.com/modflowpy/pymake/zipball/master
        pip install https://github.com/modflowpy/flopy/zipball/develop
        pip install https://github.com/pygsflow/pygsflow/zipball/develop

    - name: Setup symbolic link to gfortran on Linux
      if: runner.os == 'Linux'
      run: |
        sudo ln -fs /usr/bin/gfortran-10 /usr/bin/gfortran
        sudo ln -fs /usr/bin/gcc-10 /usr/bin/gcc
        sudo ln -fs /usr/bin/g++-10 /usr/bin/g++

    - name: Print GNU compiler versions
      run: |
        gfortran --version
        gcc --version
        g++ --version
      
    - name: Run nosetest CI testing suite for GSFLOW
      shell: bash -l {0}
      run: |
        cd autotest
        chmod u+x make_linux_gfortran.sh
        sed -i -e 's/\r$//' make_linux_gfortran.sh
        ./make_linux_gfortran.sh
        chmod a+x gsflow
        pip install pytest
        pytest -v