NAMESPACE

import("xcms")
import("rsm")
import("CAMERA")
import("BiocParallel")

importFrom("grDevices", "dev.off", "jpeg")
importFrom("graphics", "contour", "par")
importFrom("stats", "as.formula", "cor", "dnorm", "lm", "predict")
importFrom("utils", "installed.packages", "write.table")

export("attachList")
export("calcPPS")
export("calculateXcmsSet")
## export("checkParams")
## export("checkRetGroupSetParams")
## export("checkXcmsSetParams")
## export("checkIntensitiesAtRtBoundaries")
export("combineParams")
export("createModel")
export("decode")
export("decodeAll")
export("encode")
## export("expand.grid.subset")
export("getBbdParameter")
export("getCcdParameter")
## export("getDefaultRetCorCenterSample")
export("getDefaultRetGroupStartingParams")
export("getDefaultXcmsSetStartingParams")
## export("getNormalizedResponse")
## export("getResponses")
export("getRGTVValues")
## export("getSlices")
export("findIsotopes.CAMERA")
export("findIsotopes.IPO")
export("optimizeRetGroup")
## export("optimizeRetGroupSlaveCluster")
## export("optimizeSlave")
export("optimizeXcmsSet")
## export("plotContours")
## export("RCSandGSIncreased")
## export("resultIncreased")
## export("retGroupCalcExperimentsCluster")
## export("retGroupExperimentStatistic")
## export("sendRetGroupSlaveFunctions")
## export("sendXcmsSetSlaveFunctions")
export("toMatrix")
export("typeCastParams")
export("writeRScript")
export("writeParamsTable")
## export("xcmsSetExperiments")
## export("xcmsSetStatistic")