diff --git a/configs/container.config b/configs/container.config index 6177421..28eed2a 100755 --- a/configs/container.config +++ b/configs/container.config @@ -4,6 +4,7 @@ process { // nextclade container is maintained via params.defaultpangolin in nextflow.config withLabel: artic { container = 'nanozoo/artic:1.3.0-dev--784493e' } withLabel: bwa { container = 'nanozoo/bwa:0.7.17--d11c0a4' } + withLabel: concompra { container = 'rkimf1/concompra:0.0.0--f3c7699' } withLabel: covarplot { container = 'nanozoo/covarplot:0.0.2--2c6e300' } withLabel: demultiplex { container = 'nanozoo/guppy_cpu:5.0.7-1--47b84be' } withLabel: fastcov { container = 'raverjay/fastcov:0.1.3--ba8c8cf6ae19' } diff --git a/configs/local.config b/configs/local.config index 023472c..5e4781d 100644 --- a/configs/local.config +++ b/configs/local.config @@ -3,6 +3,7 @@ process.executor = 'local' process { withLabel: artic { cpus = params.cores } withLabel: bwa { cpus = params.cores } + withLabel: concompra { cpus = params.cores } withLabel: covarplot { cpus = 1 } withLabel: demultiplex { cpus = params.max_cores } withLabel: fastcov { cpus = params.cores } diff --git a/configs/nodes.config b/configs/nodes.config index ace81fd..d695ddb 100644 --- a/configs/nodes.config +++ b/configs/nodes.config @@ -1,7 +1,7 @@ process { withLabel: artic { cpus = 20; memory = '20 GB' } withLabel: bwa { cpus = 12; memory = '12 GB' } - withLabel: covarplot { cpus = 1; memory = '2 GB' } + withLabel: concompra { cpus = 14 memory = '4 GB' } withLabel: demultiplex { cpus = 12; memory = '12 GB' } withLabel: fastcov { cpus = 4; memory = '8 GB' } withLabel: fasttree { cpus = 4; memory = '2 GB' }