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2023 HBHL BigBrain workshop: From BigBrains to BrainSpaces

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License: GPL v3 Tutorial slides env GitHub stars

Installing the python environment on Linux

For Linux, if want to have the same libraries used for this tutorial installed on your system you can run:

wget https://raw.githubusercontent.com/rcruces/2023_BigBrain_workshop_BigBrains-BrainSpaces/main/environment.yml
conda env create -f environment.yml

Installing the python environment on MacOS

For MacOSX,

wget https://raw.githubusercontent.com/rcruces/2023_BigBrain_workshop_BigBrains-BrainSpaces/main/mac_env.yml
conda env create -f mac_env.yml

Then using brew install git-annex:

brew install jupyterlab
brew install datalad
pip install RISE