python-package.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Python package

on:
  push:
    branches:
    - master
    tags:
    - "*"
  pull_request:
  schedule:
    - cron: '30 2 * * 1' # Every Monday @ 2h30am UTC

env:
  POETRY_VERSION: 2.0.1

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}

    - name: Cache Installations
      id: cache-installs
      uses: actions/cache@v3
      with:
        path: ~/.local
        key: install-${{ env.INSTALL_CACHE_HASH }}-2

    - name: Install Poetry
      uses: abatilo/actions-poetry@v3
      with:
        poetry-version: ${{ env.POETRY_VERSION }}

    - name: Test poetry
      run: poetry --version

    - name: Checkout source
      uses: actions/checkout@v2
      with:
        fetch-depth: 1

    - name: Install breizorro
      run: poetry install

    - name: Install breizorro with all modules
      run: poetry install --extras "all"
      
    - name: Install breizorro with tests
      run: poetry install --with tests --no-interaction

    - name: Lint with flake8
      run: |
        # stop the build if there are Python syntax errors or undefined names
        poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics

    - name: Test command
      run: |
        poetry run breizorro --help

    - name: Download test dataset
      run: |
        curl -L -o mypipelinerun_circinus_p3_3-MFS-image.tar "https://www.dropbox.com/scl/fi/xoaqth4jhjnx098xbegvn/mypipelinerun_circinus_p3_3-MFS-image.tar?rlkey=vdgkz2xpjgpp7v7hjxm7kg6g2&st=isg70eve&dl=1" && tar -xvf mypipelinerun_circinus_p3_3-MFS-image.tar

    - name: Run end-to-end test
      run: |
        poetry run breizorro -r mypipelinerun_circinus_p3_3-MFS-image.fits --outfile test.mask.fits --outregion test.mask.rgn
        poetry run breizorro -r mypipelinerun_circinus_p3_3-MFS-image.fits -t 10 --merge test.mask.fits,test.mask.rgn --remove-islands 19,21,14h16m20.3:-65d42m07 --number-islands