diff --git a/requirements.txt b/requirements.txt
index 268ee49..cb076c3 100755
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,6 @@
 ruamel.yaml >= 0.16
 sevenbridges-python >= 2.0
 nf-core==2.1
-wrabbit==0.1.3
+wrabbit==0.2.0
 cwlformat
 packaging
\ No newline at end of file
diff --git a/sbpack/noncwl/manifest.py b/sbpack/noncwl/manifest.py
index 3dd1a96..cb87120 100755
--- a/sbpack/noncwl/manifest.py
+++ b/sbpack/noncwl/manifest.py
@@ -134,6 +134,8 @@ def validate_sheet(
             continue
         else:
             basename = os.path.basename(path)
+            if not basename:
+                continue
             parent = None
             if os.path.dirname(path):
                 parent = checked[os.path.dirname(path)]
@@ -239,7 +241,7 @@ def main():
         help="Name of the output file.",
     )
     parser.add_argument(
-        "--upload", '-u', action='store_true', required=False,
+        "--upload", action='store_true', required=False,
         help="Upload the file to the project after making it.",
     )
     parser.add_argument(
diff --git a/sbpack/noncwl/nextflow.py b/sbpack/noncwl/nextflow.py
index 84ec02c..f52950b 100755
--- a/sbpack/noncwl/nextflow.py
+++ b/sbpack/noncwl/nextflow.py
@@ -252,6 +252,8 @@ def main():
         # Do this only if the nextflow_schema.json is missing
         if not nf_wrapper.nf_schema_path:
             nf_wrapper.nf_schema_build()
+            # update the nextflow_schema.json location
+            nf_wrapper.init_config_files()
 
         # Create app
         nf_wrapper.generate_sb_app(
diff --git a/sbpack/version.py b/sbpack/version.py
index 6588dfc..abb3831 100755
--- a/sbpack/version.py
+++ b/sbpack/version.py
@@ -1 +1 @@
-__version__ = "2024.6.3rc1"
+__version__ = "2024.6.24rc1"