pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<parent>
		<groupId>org.sonatype.oss</groupId>
		<artifactId>oss-parent</artifactId>
		<version>9</version>
	</parent>
	<groupId>nl.systemsgenetics</groupId>
	<artifactId>systemsgenetics</artifactId>
	<version>1.0.4</version>
	<packaging>pom</packaging>	
	<properties>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
	</properties>
	<build>
		<pluginManagement>
			<plugins>
				<!-- use java 1.6 -->
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-compiler-plugin</artifactId>
					<version>3.0</version>
					<configuration>
						<source>1.6</source>
						<target>1.6</target>
						<compilerArguments>
							<Xlint/>
						</compilerArguments>
					</configuration>
				</plugin>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-site-plugin</artifactId>
					<version>3.3</version>
				</plugin>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-javadoc-plugin</artifactId>
					<version>2.10.1</version>
					<configuration>
						<additionalparam>-Xdoclint:none</additionalparam>
					</configuration>
				</plugin>
			</plugins>
		</pluginManagement>		
	</build>
	<reporting>
		<plugins>
			<!-- code coverage -->
			<plugin>
				<groupId>org.codehaus.mojo</groupId>
				<artifactId>cobertura-maven-plugin</artifactId>
				<version>2.6</version>
				<configuration>
					<aggregate>true</aggregate>
					<formats>
						<format>html</format>
						<format>xml</format>
					</formats>
				</configuration>
			</plugin>
			<!-- code analysis -->
			<plugin>
				<groupId>org.codehaus.mojo</groupId>
				<artifactId>findbugs-maven-plugin</artifactId>
				<version>3.0.0</version>
				<configuration>
					<xmlOutput>true</xmlOutput>
				</configuration>
			</plugin>
		</plugins>
	</reporting>
	<modules>
		<module>genetica-libraries</module>
		<module>imputation-tool</module>
		<module>eqtl-mapping-pipeline</module>
		<module>Genotype-IO</module>
		<module>GadoCommandline</module>
		<module>Genotype-Harmonizer</module>
		<module>eqtl-functional-enrichment</module>
		<module>GeneticRiskScoreCalculator</module>
		<module>BinaryMetaAnalyzer</module>
		<module>eQTLInteractionAnalyser</module>
		<module>javaPoCA</module>
		<module>cellTypeSpecificAlleleSpecificExpression</module>
		<module>MetaGenomicDataProcessing</module>
		<module>GeneNetworkBackend</module>
		<module>Decon2/Decon-eQTL</module>
	 <module>FunctionEnrichmentOfTransQtls</module>
	 <module>DEPICT2</module>
	</modules>
</project>