Fix recent error with plotly : Prevents any plots -> .html from being made

[ppreshant]

Error when analysis.R with q54_S079-RNA2_Travis-1-5_RAM.xls file. The empty string after '40-CT' is the issue, not the plot title!

processing file: make_html_plots.rmd
  |....      |  38% [cq_plt]      
Quitting from lines 32-42 [cq_plt] (make_html_plots.rmd)
Error in `train()`:
! unused argument (list("q54_S079-RNA2_Travis-1-5_RAM", "40 - Cq", "40 - CT", "", "Sample_category"))
Backtrace:
 1. plotly::ggplotly(horz.cq)
 2. plotly:::ggplotly.ggplot(horz.cq)
 3. plotly::gg2list(...)
 4. plotly:::get_gdefs_ggproto(npscales$scales, theme, plot, layers)
 5. guides$train(scales, theme$legend.direction, plot$labels)
Warning messages:
1: In class(fl$Results$CT) <- "numeric" : NAs introduced by coercion
2: Removed 11 rows containing
missing values or values outside
the scale range (`geom_point()`). 
3: Removed 11 rows containing
missing values or values outside
the scale range (`geom_point()`). 
4: Removed 11 rows containing
missing values or values outside
the scale range (`geom_point()`). 
5: Removed 11 rows containing
missing values or values outside
the scale range (`geom_point()`). 
6: Removed 11 rows containing
missing values or values outside
the scale range (`geom_point()`). 
7: Removed 11 rows containing
missing values or values outside
the scale range (`geom_point()`). 
8: Removed 11 rows containing
non-finite outside the scale
range (`stat_boxplot()`). 
9: Removed 11 rows containing
missing values or values outside
the scale range (`geom_point()`).

[ppreshant]

Why is the title of the plot appearing along with other stuff (from a sample renamer presumably?)
unused argument (list("q54_S079-RNA2_Travis-1-5_RAM", "40 - Cq", "40 - CT", "", "Sample_category"

[ppreshant]

Does the ggplotly fail due to missing y_axis label -> if an empty string is used
(after some update?)

Couldn't reproduce this with a simple plot

a <- tibble(a1 = 1:5, a2 = a1^2)

plt <- {ggplot(a, aes(a1, a2)) + geom_point()  + 
    
    list(
    labs(title = 'tst'), xlab('ants'), ylab('')
    )
  
    } %>% print

ggplotly(plt) # this works fine 😞 ; even with ylab(NULL)

[ppreshant]

No 😞 : Is this fixed if you add back a y axis label? since plot is flipped, this would be xlab(..).

• Also same error with plt.cq (that is not coord flipped as well)

tst <- horz.cq + xlab('dymmmy')
ggplotly(tst)

Error in train(..., self = self) : 
  unused argument (list("40 - CT", "q54_S079-RNA2_Travis-1-5_RAM", "40 - Cq", "dymmmy", "Sample_category"))```