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It looks like phylotree.js doesn't support Nexus comments like we're used to (e.g. [&phyloref:actual="#Alligatorinae",phyloref:actualLabel="Alligatorinae"]), but it does support "tags", using curly brackets (the example they provided is (a,(b{TAG},(c{TAG},d{ANOTHERTAG}))) as in their Newick parsing code.
So:
We can't read Newick strings produced by our Nexus, but that's fine -- we don't support Nexus anyway.
We can't read Newick strings with Nexus comments from other sources, but I don't think people would expect that.
We don't do anything useful with the "tags" read by Newick.
I think all of that is fine for Klados v1.0. Should we close this issue?
For now we should ignore annotations.
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