Remove baseIRI from n-Quads generation

[gaurav]

Because of phyloref/phyx.js#113, we need to include a baseIRI when generating n-Quads:

klados/src/components/sidebar/Sidebar.vue

Line 445 in 2e338c1

wrapped.toRDF('https://example.org/phyx#').then((content) => {

This issue a reminder to remove this once we fix this in phyx.js.

[gaurav]

Need to review.

[gaurav]

Both the "Export as ontology" button and the "Export as JSON-LD" button use this baseIRI, and I don't think there's an obvious way to work around this (see phyloref/phyx.js#113 for our efforts in phyx.js). I propose we make this configurable in the "Advanced" modal -- if a user wants to set this to blank and export a JSON-LD or n-triples file containing only relative references (e.g. #phylogeny0 instead of https://example.org/phyx#phylogeny0), they should be able to do that, but Protege insists on only reading files that contain full IRIs, which is why a base IRI is required.

[hlapp]

Protege insists on only reading files that contain full IRIs, which is why a base IRI is required.

Should we document this somewhere so that in the future we and others can remember why this is there?

[gaurav]

• This should be documented in the source code for Klados to explain why this is happening (with links to this issue and the corresponding phyx.js).