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Plot epitope specificity on GEX umap #48

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cr2106 opened this issue Aug 21, 2022 · 1 comment

cr2106 commented Aug 21, 2022

Hello,

would it be possible to plot TCR matching to database on GEX umap?

Thank you for your help!

Owner

phbradley commented Aug 21, 2022

Hi there,
Thanks for trying conga! The function conga.plotting.make_tcr_db_match_plot does just that. It gets called here

https://github.com/phbradley/conga/blob/master/scripts/run_conga.py#L800

in the run_conga.py script, and it's defined here:

https://github.com/phbradley/conga/blob/master/conga/plotting.py#L1811

Let me know if that's not what you're looking for.
Take care,
Phil

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