diff --git a/DESCRIPTION b/DESCRIPTION index d3245f4..37069e2 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: pharmaverseadam Type: Package Title: ADaM Test Data for the 'Pharmaverse' Family of Packages -Version: 1.0.0 +Version: 1.1.0 Authors@R: c( person("Edoardo", "Mancini", email = "edoardo.mancini@roche.com", role = c("aut", "cre"), comment = c(ORCID = "0009-0006-4899-8641")), person("Kangjie", "Zhang", role = "aut"), @@ -13,9 +13,8 @@ Authors@R: c( ) Description: A set of Analysis Data Model (ADaM) datasets constructed using the Study Data Tabulation Model (SDTM) datasets contained in the 'pharmaversesdtm' package and - the template scripts from the 'admiral' family of packages. ADaM dataset specifications are - described in: CDISC Analysis Data Model Team - (2021) . + the template scripts from the 'admiral' family of packages. ADaM dataset specifications + are described in the CDISC ADaM implementation guide, accessible by creating a free account on . License: Apache License (>= 2) URL: https://pharmaverse.github.io/pharmaverseadam/, https://github.com/pharmaverse/pharmaverseadam/ Encoding: UTF-8 diff --git a/NEWS.md b/NEWS.md index 097a1fa..a1c8341 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,8 +1,18 @@ -# pharmaversesdtm (development version) +# pharmaverseadam 1.1.0 -# New features +Ad-hoc release. -
+## New features + + - Added `ADVS` from `{admiralpeds}` using version 0.1.1.9001 of the package. + + - Refreshed `{pharmaverseadam}` datasets using `{admiral}` 1.1.1.9012 (development version) `{admiralophtha}` 1.1.0.9004 (development version), `{admiralonco}` 1.1.0, `{admiralvaccine}` 0.2.0, `{pharmaversesdtm}` 1.1.0. (#85) + +## Documentation + + - DESCRIPTION file updated ahead of CRAN release to fix link to CDISC website. + +
Developer Notes - Activated automatic version bumping CICD workflow. (#72) @@ -11,21 +21,27 @@ # pharmaverseadam 1.0.0 +The first stable version of `{pharmaverseadam}`! + +## New features + - Refreshed `{pharmaverseadam}` datasets using `{admiral}` 1.1.1, `{admiralophtha}` 1.1.0, `{admiralonco}` 1.1.0, `{admiralvaccine}` 0.2.0. (#58) + ## Documentation - - The first stable version of `{pharmaverseadam}`! - - Dataset labels are updated to align with ADaM IG (#64) - - Refreshed `{pharmaverseadam}` datasets using `{admiral}` 1.1.1, `{admiralophtha}` 1.1.0, `{admiralonco}` 1.1.0, `{admiralvaccine}` 0.2.0. (#58) + - Dataset labels were updated to align with ADaM IG. (#64) # pharmaverseadam 0.2.0 ## New Features - - Variables labels are applied to datasets by `metacore`/`metatools`. (#50) - - ADPC, ADPPK and ADPP are updated to handle urine records. (#57) + - ADPC, ADPPK and ADPP were updated to handle urine records. (#57) + +## Documentation + + - Variables labels were applied to datasets by `metacore`/`metatools`. (#50) # pharmaverseadam 0.1.1 -## New Features +## Documentation - DESCRIPTION file updated ahead of CRAN release to include references to ADaM Implementation Guide 1.3. diff --git a/R/adae.R b/R/adae.R index 44c97d5..d63a9dc 100644 --- a/R/adae.R +++ b/R/adae.R @@ -1,11 +1,10 @@ -#' Adverse Events Analysis -#' -#' An example of ADAE ADaM dataset +#' adae #' +#' Adverse Events Analysis #' #' @name adae #' @docType data -#' @format A data frame with 101 columns: +#' @format A data frame with 105 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ DOMAIN }{Domain Abbreviation} @@ -97,12 +96,16 @@ #' \item{ EOSSTT }{End of Study Status} #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/adbcva_ophtha.R b/R/adbcva_ophtha.R index 9540dcc..2dc4486 100644 --- a/R/adbcva_ophtha.R +++ b/R/adbcva_ophtha.R @@ -1,10 +1,10 @@ -#' Best Corrected Visual Acuity Analysis +#' adbcva_ophtha #' -#' An example of ADBCVA ADaM dataset for Ophthalmology studies +#' Best Corrected Visual Acuity Analysis #' #' @name adbcva_ophtha #' @docType data -#' @format A data frame with 116 columns: +#' @format A data frame with 120 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ DOMAIN }{Domain Abbreviation} @@ -93,12 +93,16 @@ #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} #' \item{ DTHDT }{Date of Death} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/adce_vaccine.R b/R/adce_vaccine.R index 1685a06..1404a7c 100644 --- a/R/adce_vaccine.R +++ b/R/adce_vaccine.R @@ -1,6 +1,6 @@ -#' Clinical Events Analysis for Vaccine +#' adce_vaccine #' -#' An example of ADCE dataset for Vaccine studies +#' Clinical Events Analysis for Vaccine #' #' @name adce_vaccine #' @docType data diff --git a/R/adcm.R b/R/adcm.R index 2abccbc..67956cc 100644 --- a/R/adcm.R +++ b/R/adcm.R @@ -1,10 +1,10 @@ -#' Concomitant Medications Analysis +#' adcm #' -#' An example of ADCM ADaM dataset +#' Concomitant Medications Analysis #' #' @name adcm #' @docType data -#' @format A data frame with 90 columns: +#' @format A data frame with 95 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ DOMAIN }{Domain Abbreviation} @@ -27,6 +27,7 @@ #' \item{ CMENDTC }{End Date/Time of Medication} #' \item{ CMSTDY }{Study Day of Start of Medication} #' \item{ CMENDY }{Study Day of End of Medication} +#' \item{ CMENRTPT }{undocumented field} #' \item{ TRTSDT }{Date of First Exposure to Treatment} #' \item{ TRTEDT }{Date of Last Exposure to Treatment} #' \item{ DTHDT }{Date of Death} @@ -85,12 +86,16 @@ #' \item{ EOSSTT }{End of Study Status} #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/adeg.R b/R/adeg.R index 0add781..4599cb5 100644 --- a/R/adeg.R +++ b/R/adeg.R @@ -1,10 +1,10 @@ -#' Electrocardiogram Tests Analysis +#' adeg #' -#' An example of ADEG ADaM dataset +#' Electrocardiogram Tests Analysis #' #' @name adeg #' @docType data -#' @format A data frame with 105 columns: +#' @format A data frame with 108 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ DOMAIN }{Domain Abbreviation} @@ -29,7 +29,6 @@ #' \item{ EGTPTNUM }{Planned Time Point Number} #' \item{ EGELTM }{Planned Elapsed Time from Time Point Ref} #' \item{ EGTPTREF }{Time Point Reference} -#' \item{ temp }{undocumented field} #' \item{ TRTSDT }{Date of First Exposure to Treatment} #' \item{ TRTEDT }{Date of Last Exposure to Treatment} #' \item{ TRT01A }{Actual Treatment for Period 01} @@ -61,10 +60,10 @@ #' \item{ TRTP }{Planned Treatment} #' \item{ TRTA }{Actual Treatment} #' \item{ ASEQ }{Analysis Sequence Number} -#' \item{ AVALCA1N }{Analysis Value Category 1 (N)} #' \item{ AVALCAT1 }{Analysis Value Category 1} -#' \item{ CHGCAT1N }{Change from Baseline Category 1 (N)} +#' \item{ AVALCA1N }{Analysis Value Category 1 (N)} #' \item{ CHGCAT1 }{Change from Baseline Category 1} +#' \item{ CHGCAT1N }{Change from Baseline Category 1 (N)} #' \item{ PARAM }{Parameter} #' \item{ PARAMN }{Parameter (N)} #' \item{ SUBJID }{Subject Identifier for the Study} @@ -100,12 +99,16 @@ #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} #' \item{ DTHDT }{Date of Death} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/adex.R b/R/adex.R index 6e6bc59..e5c73ad 100644 --- a/R/adex.R +++ b/R/adex.R @@ -1,10 +1,10 @@ -#' Exposure Analysis +#' adex #' -#' An example of ADEX ADaM dataset +#' Exposure Analysis #' #' @name adex #' @docType data -#' @format A data frame with 88 columns: +#' @format A data frame with 92 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ DOMAIN }{Domain Abbreviation} @@ -83,12 +83,16 @@ #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} #' \item{ DTHDT }{Date of Death} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/adface_vaccine.R b/R/adface_vaccine.R index d47d158..80dbaf0 100644 --- a/R/adface_vaccine.R +++ b/R/adface_vaccine.R @@ -1,10 +1,10 @@ -#' Findings About Clinical Events Analysis +#' adface_vaccine #' -#' An example of ADFACE for Vaccine studies +#' Findings About Clinical Events Analysis #' #' @name adface_vaccine #' @docType data -#' @format A data frame with 60 columns: +#' @format A data frame with 61 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ USUBJID }{Unique Subject Identifier} @@ -66,6 +66,7 @@ #' \item{ EVENTDFL }{Day Event Value Flag} #' \item{ ANL01FL }{Analysis Flag 01} #' \item{ ANL02FL }{Analysis Flag 02} +#' \item{ ANL03FL }{undocumented field} #' } #' #' @source Generated from admiralvaccine package (template ad_adface.R). diff --git a/R/adis_vaccine.R b/R/adis_vaccine.R index bbe935f..db584f8 100644 --- a/R/adis_vaccine.R +++ b/R/adis_vaccine.R @@ -1,6 +1,6 @@ -#' Immunogenicity Specimen Assessments +#' adis_vaccine #' -#' An example of ADIS dataset for Vaccine studies +#' Immunogenicity Specimen Assessments #' #' @name adis_vaccine #' @docType data diff --git a/R/adlb.R b/R/adlb.R index e460444..7ccc927 100644 --- a/R/adlb.R +++ b/R/adlb.R @@ -1,10 +1,10 @@ -#' Laboratory Analysis +#' adlb #' -#' An example of ADLB ADaM dataset +#' Laboratory Analysis #' #' @name adlb #' @docType data -#' @format A data frame with 111 columns: +#' @format A data frame with 115 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ DOMAIN }{Domain Abbreviation} @@ -106,12 +106,16 @@ #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} #' \item{ DTHDT }{Date of Death} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/adlbhy.R b/R/adlbhy.R index 865bb97..75e6569 100644 --- a/R/adlbhy.R +++ b/R/adlbhy.R @@ -1,6 +1,6 @@ -#' Analysis of Lab Hy's Law +#' adlbhy #' -#' A template of the ADLBHY dataset +#' Analysis of Lab Hy's Law #' #' @name adlbhy #' @docType data diff --git a/R/admh.R b/R/admh.R index 1d77c0e..67bb841 100644 --- a/R/admh.R +++ b/R/admh.R @@ -1,10 +1,10 @@ -#' Medical History Analysis +#' admh #' -#' A template of ADMH ADaM dataset +#' Medical History Analysis #' #' @name admh #' @docType data -#' @format A data frame with 110 columns: +#' @format A data frame with 114 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ DOMAIN }{Domain Abbreviation} @@ -105,12 +105,16 @@ #' \item{ EOSSTT }{End of Study Status} #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/adoe_ophtha.R b/R/adoe_ophtha.R index 11f7314..2ec783c 100644 --- a/R/adoe_ophtha.R +++ b/R/adoe_ophtha.R @@ -1,10 +1,10 @@ -#' Exam Analysis for Ophthalmology +#' adoe_ophtha #' -#' An example of ADOE dataset for Ophthalmology studies +#' Exam Analysis for Ophthalmology #' #' @name adoe_ophtha #' @docType data -#' @format A data frame with 98 columns: +#' @format A data frame with 102 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ DOMAIN }{Domain Abbreviation} @@ -93,12 +93,16 @@ #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} #' \item{ DTHDT }{Date of Death} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/adpc.R b/R/adpc.R index 1a0219c..8a24482 100644 --- a/R/adpc.R +++ b/R/adpc.R @@ -1,10 +1,10 @@ -#' Pharmacokinetic Concentrations +#' adpc #' -#' An example of ADPC dataset +#' Pharmacokinetic Concentrations #' #' @name adpc #' @docType data -#' @format A data frame with 123 columns: +#' @format A data frame with 127 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ USUBJID }{Unique Subject Identifier} @@ -118,12 +118,16 @@ #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} #' \item{ DTHDT }{Date of Death} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Under 30 Group} diff --git a/R/adpp.R b/R/adpp.R index 7470988..13563a3 100644 --- a/R/adpp.R +++ b/R/adpp.R @@ -1,10 +1,10 @@ -#' Pharmacokinetic Parameters +#' adpp #' -#' An example of ADPP ADaM dataset +#' Pharmacokinetic Parameters #' #' @name adpp #' @docType data -#' @format A data frame with 75 columns: +#' @format A data frame with 79 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ USUBJID }{Unique Subject Identifier} @@ -37,8 +37,8 @@ #' \item{ VISIT }{Visit Name} #' \item{ TRTP }{Planned Treatment} #' \item{ TRTA }{Actual Treatment} -#' \item{ AVALCA1N }{Analysis Value Category 1 (N)} #' \item{ AVALCAT1 }{Analysis Value Category 1} +#' \item{ AVALCA1N }{Analysis Value Category 1 (N)} #' \item{ SUBJID }{Subject Identifier for the Study} #' \item{ RFSTDTC }{Subject Reference Start Date/Time} #' \item{ RFENDTC }{Subject Reference End Date/Time} @@ -70,12 +70,16 @@ #' \item{ EOSSTT }{End of Study Status} #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/adppk.R b/R/adppk.R index 98a57dd..ea07c93 100644 --- a/R/adppk.R +++ b/R/adppk.R @@ -1,6 +1,6 @@ -#' Population Pharmacokinetic +#' adppk #' -#' A template of ADPPK ADaM dataset +#' Population Pharmacokinetic #' #' @name adppk #' @docType data diff --git a/R/adrs_onco.R b/R/adrs_onco.R index 182083f..1d44de5 100644 --- a/R/adrs_onco.R +++ b/R/adrs_onco.R @@ -1,6 +1,6 @@ -#' Tumor Response Analysis +#' adrs_onco #' -#' An example of ADRS dataset for Oncology studies +#' Tumor Response Analysis #' #' @name adrs_onco #' @docType data diff --git a/R/adsl.R b/R/adsl.R index 36421e2..7e3a02f 100644 --- a/R/adsl.R +++ b/R/adsl.R @@ -1,6 +1,6 @@ -#' Subject Level Analysis +#' adsl #' -#' An example of ADSL ADaM dataset +#' Subject Level Analysis #' #' @name adsl #' @docType data diff --git a/R/adsl_vaccine.R b/R/adsl_vaccine.R index 1d30728..58344c1 100644 --- a/R/adsl_vaccine.R +++ b/R/adsl_vaccine.R @@ -1,6 +1,6 @@ -#' Subject Level Analysis for Vaccine +#' adsl_vaccine #' -#' An example of ADSL ADaM dataset for Vaccine studies +#' Subject Level Analysis for Vaccine #' #' @name adsl_vaccine #' @docType data diff --git a/R/adtr_onco.R b/R/adtr_onco.R index bba99c2..6153071 100644 --- a/R/adtr_onco.R +++ b/R/adtr_onco.R @@ -1,6 +1,6 @@ -#' Tumor Results Analysis for Oncology +#' adtr_onco #' -#' An example of ADTR ADaM dataset for Oncology studies +#' Tumor Results Analysis for Oncology #' #' @name adtr_onco #' @docType data diff --git a/R/adtte_onco.R b/R/adtte_onco.R index 8136fda..d7f9e4f 100644 --- a/R/adtte_onco.R +++ b/R/adtte_onco.R @@ -1,6 +1,6 @@ -#' Time to Event Analysis for Oncology +#' adtte_onco #' -#' An example of ADTTE ADaM dataset for Oncology studies +#' Time to Event Analysis for Oncology #' #' @name adtte_onco #' @docType data diff --git a/R/advfq_ophtha.R b/R/advfq_ophtha.R index ed296db..c6cebf7 100644 --- a/R/advfq_ophtha.R +++ b/R/advfq_ophtha.R @@ -1,10 +1,10 @@ -#' Visual Function Questionnaire Analysis +#' advfq_ophtha #' -#' An example of ADVFQ ADaM dataset for Ophthalmology studies +#' Visual Function Questionnaire Analysis #' #' @name advfq_ophtha #' @docType data -#' @format A data frame with 85 columns: +#' @format A data frame with 89 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ DOMAIN }{Domain Abbreviation} @@ -80,12 +80,16 @@ #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} #' \item{ DTHDT }{Date of Death} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/advs.R b/R/advs.R index f8ce426..d962294 100644 --- a/R/advs.R +++ b/R/advs.R @@ -1,10 +1,10 @@ -#' Vital Signs Analysis +#' advs #' -#' An example of ADVS ADaM dataset +#' Vital Signs Analysis #' #' @name advs #' @docType data -#' @format A data frame with 101 columns: +#' @format A data frame with 105 columns: #' \describe{ #' \item{ STUDYID }{Study Identifier} #' \item{ DOMAIN }{Domain Abbreviation} @@ -59,8 +59,8 @@ #' \item{ TRTP }{Planned Treatment} #' \item{ TRTA }{Actual Treatment} #' \item{ ASEQ }{Analysis Sequence Number} -#' \item{ AVALCA1N }{Analysis Value Category 1 (N)} #' \item{ AVALCAT1 }{Analysis Value Category 1} +#' \item{ AVALCA1N }{Analysis Value Category 1 (N)} #' \item{ PARAM }{Parameter} #' \item{ PARAMN }{Parameter (N)} #' \item{ SUBJID }{Subject Identifier for the Study} @@ -96,12 +96,16 @@ #' \item{ FRVDT }{Final Retrievel Visit Date} #' \item{ RANDDT }{Date of Randomization} #' \item{ DTHDT }{Date of Death} +#' \item{ DTHDTF }{undocumented field} #' \item{ DTHADY }{Relative Day of Death} #' \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +#' \item{ DTHCAUS }{undocumented field} +#' \item{ DTHDOM }{undocumented field} +#' \item{ DTHCGR1 }{undocumented field} #' \item{ LSTALVDT }{Date Last Known Alive} -#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ SAFFL }{Safety Population Flag} #' \item{ RACEGR1 }{Pooled Race Group 1} +#' \item{ AGEGR1 }{Pooled Age Group 1} #' \item{ REGION1 }{Geographic Region 1} #' \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} #' \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} diff --git a/R/advs_peds.R b/R/advs_peds.R new file mode 100644 index 0000000..e12e707 --- /dev/null +++ b/R/advs_peds.R @@ -0,0 +1,96 @@ +#' advs_peds +#' +#' Vital Signs Analysis for Pediatrics +#' +#' @name advs_peds +#' @docType data +#' @format A data frame with 80 columns: +#' \describe{ +#' \item{ STUDYID }{Study Identifier} +#' \item{ DOMAIN }{Domain Abbreviation} +#' \item{ USUBJID }{Unique Subject Identifier} +#' \item{ VSSEQ }{Sequence Number} +#' \item{ VSTESTCD }{Vital Signs Test Short Name} +#' \item{ VSTEST }{Vital Signs Test Name} +#' \item{ VSPOS }{Vital Signs Position of Subject} +#' \item{ VSORRES }{Result or Finding in Original Units} +#' \item{ VSORRESU }{Original Units} +#' \item{ VSSTRESC }{Character Result/Finding in Std Format} +#' \item{ VSSTRESN }{Numeric Result/Finding in Standard Units} +#' \item{ VSSTRESU }{Standard Units} +#' \item{ VSSTAT }{Completion Status} +#' \item{ VSLOC }{Location of Vital Signs Measurement} +#' \item{ VSBLFL }{Baseline Flag} +#' \item{ VISITNUM }{Visit Number} +#' \item{ VISIT }{Visit Name} +#' \item{ VISITDY }{Planned Study Day of Visit} +#' \item{ VSDTC }{Date/Time of Measurements} +#' \item{ VSDY }{Study Day of Vital Signs} +#' \item{ VSTPT }{Planned Time Point Name} +#' \item{ VSTPTNUM }{Planned Time Point Number} +#' \item{ VSELTM }{Planned Elapsed Time from Time Point Ref} +#' \item{ VSTPTREF }{Time Point Reference} +#' \item{ VSEVAL }{Evaluator} +#' \item{ EPOCH }{Epoch} +#' \item{ SEX }{Sex} +#' \item{ BRTHDTC }{Date/Time of Birth (Character)} +#' \item{ TRTSDT }{Date of First Exposure to Treatment} +#' \item{ TRTEDT }{Date of Last Exposure to Treatment} +#' \item{ TRT01A }{Actual Treatment for Period 01} +#' \item{ TRT01P }{Planned Treatment for Period 01} +#' \item{ BRTHDT }{Date/Time of Birth} +#' \item{ ADT }{Analysis Date} +#' \item{ ADY }{Analysis Relative Day} +#' \item{ AAGECUR }{Current Analysis Age (Days)} +#' \item{ AAGECURU }{Current Analysis Age Units} +#' \item{ PARAMCD }{Parameter Code} +#' \item{ AVAL }{Analysis Value} +#' \item{ ATPTN }{Analysis Timepoint (N)} +#' \item{ ATPT }{Analysis Timepoint} +#' \item{ AVISIT }{Analysis Visit} +#' \item{ AVISITN }{Analysis Visit (N)} +#' \item{ HGTTMP }{Temporary Height at Timepoint} +#' \item{ HGTTMPU }{Temporary Height at Timepoint Units} +#' \item{ PARAM }{Parameter} +#' \item{ PARAMN }{Parameter (N)} +#' \item{ ABLFL }{Baseline Record Flag} +#' \item{ BASE }{Baseline Value} +#' \item{ CHG }{Change from Baseline} +#' \item{ PCHG }{Percent Change from Baseline} +#' \item{ ONTRTFL }{On Treatment Record Flag} +#' \item{ ANL01FL }{Analysis Flag 01} +#' \item{ SUBJID }{Subject Identifier for the Study} +#' \item{ RFSTDTC }{Subject Reference Start Date/Time} +#' \item{ RFENDTC }{Subject Reference End Date/Time} +#' \item{ RFXSTDTC }{Date/Time of First Study Treatment} +#' \item{ RFXENDTC }{Date/Time of Last Study Treatment} +#' \item{ RFICDTC }{Date/Time of Informed Consent} +#' \item{ RFPENDTC }{Date/Time of End of Participation} +#' \item{ DTHDTC }{Date/Time of Death} +#' \item{ DTHFL }{Subject Death Flag} +#' \item{ SITEID }{Study Site Identifier} +#' \item{ AGE }{Age} +#' \item{ AGEU }{Age Units} +#' \item{ RACE }{Race} +#' \item{ ETHNIC }{Ethnicity} +#' \item{ ARMCD }{Planned Arm Code} +#' \item{ ARM }{Description of Planned Arm} +#' \item{ ACTARMCD }{Actual Arm Code} +#' \item{ ACTARM }{Description of Actual Arm} +#' \item{ COUNTRY }{Country} +#' \item{ DMDTC }{Date/Time of Collection} +#' \item{ DMDY }{Study Day of Collection} +#' \item{ TRTSDTM }{Datetime of First Exposure to Treatment} +#' \item{ TRTSTMF }{Time of First Exposure Imput. Flag} +#' \item{ TRTEDTM }{Datetime of Last Exposure to Treatment} +#' \item{ TRTETMF }{Time of Last Exposure Imput. Flag} +#' \item{ TRTDURD }{Total Treatment Duration (Days)} +#' \item{ ASEQ }{Analysis Sequence Number} +#' } +#' +#' @source Generated from admiralpeds package (template ad_advs.R). +#' @references None +#' +#' @examples +#' data("advs_peds") +"advs_peds" diff --git a/README.md b/README.md index 1a1f841..6b4126a 100644 --- a/README.md +++ b/README.md @@ -21,8 +21,8 @@ of packages. # Package Contents The ADaM contents of this package is populated by an action that -executes the `{admiral}`, `{admiralonco}`, `{admiralophtha}` and -`{admiralvaccine}` templates and saves the resulting datasets here. This +executes the `{admiral}`, `{admiralonco}`, `{admiralophtha}`, +`{admiralvaccine}` and `{admiralpeds}` templates and saves the resulting datasets here. This action can be triggered manually by the package maintainers in two scenarios: diff --git a/data-raw/create_adams_data.R b/data-raw/create_adams_data.R index 7c04d62..b636819 100644 --- a/data-raw/create_adams_data.R +++ b/data-raw/create_adams_data.R @@ -135,13 +135,13 @@ if (update_pkg) { } # dict to match admiral xlsx specs suffixes -suffixes_dict <- list("_ophtha" = "_P", "_onco" = "_O", "_vaccine" = "_V") +suffixes_dict <- list("_ophtha" = "_P", "_onco" = "_O", "_vaccine" = "_V", "_peds" = "_E") mc <- metacore::spec_to_metacore("inst/extdata/adams-specs.xlsx", where_sep_sheet = FALSE, quiet = TRUE ) -packages_list <- c("admiral", "admiralonco", "admiralophtha", "admiralvaccine") +packages_list <- c("admiral", "admiralonco", "admiralophtha", "admiralvaccine", "admiralpeds") all_results <- c() for (pkg in packages_list) { diff --git a/data/adae.rda b/data/adae.rda index 25e3eb5..fdbecda 100644 Binary files a/data/adae.rda and b/data/adae.rda differ diff --git a/data/adbcva_ophtha.rda b/data/adbcva_ophtha.rda index 5f4652b..31ee069 100644 Binary files a/data/adbcva_ophtha.rda and b/data/adbcva_ophtha.rda differ diff --git a/data/adce_vaccine.rda b/data/adce_vaccine.rda index 4cd7640..3516816 100644 Binary files a/data/adce_vaccine.rda and b/data/adce_vaccine.rda differ diff --git a/data/adcm.rda b/data/adcm.rda index 36a3a58..70e0502 100644 Binary files a/data/adcm.rda and b/data/adcm.rda differ diff --git a/data/adeg.rda b/data/adeg.rda index b6eff1c..a693c3a 100644 Binary files a/data/adeg.rda and b/data/adeg.rda differ diff --git a/data/adex.rda b/data/adex.rda index f7d5a8e..19fe314 100644 Binary files a/data/adex.rda and b/data/adex.rda differ diff --git a/data/adface_vaccine.rda b/data/adface_vaccine.rda index 6b8f0cc..d128bae 100644 Binary files a/data/adface_vaccine.rda and b/data/adface_vaccine.rda differ diff --git a/data/adis_vaccine.rda b/data/adis_vaccine.rda index be41e0f..5fe8647 100644 Binary files a/data/adis_vaccine.rda and b/data/adis_vaccine.rda differ diff --git a/data/adlb.rda b/data/adlb.rda index 745eb91..7f17397 100644 Binary files a/data/adlb.rda and b/data/adlb.rda differ diff --git a/data/adlbhy.rda b/data/adlbhy.rda index 008acd7..2f35667 100644 Binary files a/data/adlbhy.rda and b/data/adlbhy.rda differ diff --git a/data/admh.rda b/data/admh.rda index 9c9bdd7..2a0cb74 100644 Binary files a/data/admh.rda and b/data/admh.rda differ diff --git a/data/adoe_ophtha.rda b/data/adoe_ophtha.rda index 5b022bc..2e4e4af 100644 Binary files a/data/adoe_ophtha.rda and b/data/adoe_ophtha.rda differ diff --git a/data/adpc.rda b/data/adpc.rda index 75088d0..a3a33c2 100644 Binary files a/data/adpc.rda and b/data/adpc.rda differ diff --git a/data/adpp.rda b/data/adpp.rda index cf748dc..df51f22 100644 Binary files a/data/adpp.rda and b/data/adpp.rda differ diff --git a/data/adppk.rda b/data/adppk.rda index 9df6df5..bbaab21 100644 Binary files a/data/adppk.rda and b/data/adppk.rda differ diff --git a/data/adrs_onco.rda b/data/adrs_onco.rda index 6750af1..80137ca 100644 Binary files a/data/adrs_onco.rda and b/data/adrs_onco.rda differ diff --git a/data/adsl.rda b/data/adsl.rda index 4c0d671..d6bc307 100644 Binary files a/data/adsl.rda and b/data/adsl.rda differ diff --git a/data/adsl_vaccine.rda b/data/adsl_vaccine.rda index 6cca5cf..92f6f46 100644 Binary files a/data/adsl_vaccine.rda and b/data/adsl_vaccine.rda differ diff --git a/data/adtr_onco.rda b/data/adtr_onco.rda index 69c05b8..987eb2b 100644 Binary files a/data/adtr_onco.rda and b/data/adtr_onco.rda differ diff --git a/data/adtte_onco.rda b/data/adtte_onco.rda index ed8dde3..c7209ed 100644 Binary files a/data/adtte_onco.rda and b/data/adtte_onco.rda differ diff --git a/data/advfq_ophtha.rda b/data/advfq_ophtha.rda index eef3667..22acdb1 100644 Binary files a/data/advfq_ophtha.rda and b/data/advfq_ophtha.rda differ diff --git a/data/advs.rda b/data/advs.rda index 6396d22..f4a3d63 100644 Binary files a/data/advs.rda and b/data/advs.rda differ diff --git a/data/advs_peds.rda b/data/advs_peds.rda new file mode 100644 index 0000000..702bdae Binary files /dev/null and b/data/advs_peds.rda differ diff --git a/inst/WORDLIST b/inst/WORDLIST index 3d450a9..5be309d 100644 --- a/inst/WORDLIST +++ b/inst/WORDLIST @@ -179,6 +179,7 @@ admh admiralonco admiralophtha admiralvaccine +admiralpeds adoe adpc adpp @@ -191,6 +192,7 @@ advfq advs onco ophtha +peds pharmaverse pharmaversesdtm Immunogenicity diff --git a/inst/extdata/adams-specs.xlsx b/inst/extdata/adams-specs.xlsx index 54a892d..af535b8 100644 Binary files a/inst/extdata/adams-specs.xlsx and b/inst/extdata/adams-specs.xlsx differ diff --git a/man/adae.Rd b/man/adae.Rd index cdd9cb0..71240ef 100644 --- a/man/adae.Rd +++ b/man/adae.Rd @@ -3,9 +3,9 @@ \docType{data} \name{adae} \alias{adae} -\title{Adverse Events Analysis} +\title{adae} \format{ -A data frame with 101 columns: +A data frame with 105 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ DOMAIN }{Domain Abbreviation} @@ -97,12 +97,16 @@ A data frame with 101 columns: \item{ EOSSTT }{End of Study Status} \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -117,7 +121,7 @@ Generated from admiral package (template ad_adae.R). adae } \description{ -An example of ADAE ADaM dataset +Adverse Events Analysis } \examples{ data("adae") diff --git a/man/adbcva_ophtha.Rd b/man/adbcva_ophtha.Rd index f010497..d2c4504 100644 --- a/man/adbcva_ophtha.Rd +++ b/man/adbcva_ophtha.Rd @@ -3,9 +3,9 @@ \docType{data} \name{adbcva_ophtha} \alias{adbcva_ophtha} -\title{Best Corrected Visual Acuity Analysis} +\title{adbcva_ophtha} \format{ -A data frame with 116 columns: +A data frame with 120 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ DOMAIN }{Domain Abbreviation} @@ -94,12 +94,16 @@ A data frame with 116 columns: \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} \item{ DTHDT }{Date of Death} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -132,7 +136,7 @@ Generated from admiralophtha package (template ad_adbcva.R). adbcva_ophtha } \description{ -An example of ADBCVA ADaM dataset for Ophthalmology studies +Best Corrected Visual Acuity Analysis } \examples{ data("adbcva_ophtha") diff --git a/man/adce_vaccine.Rd b/man/adce_vaccine.Rd index db8be6f..3e100ef 100644 --- a/man/adce_vaccine.Rd +++ b/man/adce_vaccine.Rd @@ -3,7 +3,7 @@ \docType{data} \name{adce_vaccine} \alias{adce_vaccine} -\title{Clinical Events Analysis for Vaccine} +\title{adce_vaccine} \format{ A data frame with 56 columns: \describe{ @@ -72,7 +72,7 @@ Generated from admiralvaccine package (template ad_adce.R). adce_vaccine } \description{ -An example of ADCE dataset for Vaccine studies +Clinical Events Analysis for Vaccine } \examples{ data("adce_vaccine") diff --git a/man/adcm.Rd b/man/adcm.Rd index ac11408..796d086 100644 --- a/man/adcm.Rd +++ b/man/adcm.Rd @@ -3,9 +3,9 @@ \docType{data} \name{adcm} \alias{adcm} -\title{Concomitant Medications Analysis} +\title{adcm} \format{ -A data frame with 90 columns: +A data frame with 95 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ DOMAIN }{Domain Abbreviation} @@ -28,6 +28,7 @@ A data frame with 90 columns: \item{ CMENDTC }{End Date/Time of Medication} \item{ CMSTDY }{Study Day of Start of Medication} \item{ CMENDY }{Study Day of End of Medication} +\item{ CMENRTPT }{undocumented field} \item{ TRTSDT }{Date of First Exposure to Treatment} \item{ TRTEDT }{Date of Last Exposure to Treatment} \item{ DTHDT }{Date of Death} @@ -86,12 +87,16 @@ A data frame with 90 columns: \item{ EOSSTT }{End of Study Status} \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -106,7 +111,7 @@ Generated from admiral package (template ad_adcm.R). adcm } \description{ -An example of ADCM ADaM dataset +Concomitant Medications Analysis } \examples{ data("adcm") diff --git a/man/adeg.Rd b/man/adeg.Rd index 895bb88..0a4fd6d 100644 --- a/man/adeg.Rd +++ b/man/adeg.Rd @@ -3,9 +3,9 @@ \docType{data} \name{adeg} \alias{adeg} -\title{Electrocardiogram Tests Analysis} +\title{adeg} \format{ -A data frame with 105 columns: +A data frame with 108 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ DOMAIN }{Domain Abbreviation} @@ -30,7 +30,6 @@ A data frame with 105 columns: \item{ EGTPTNUM }{Planned Time Point Number} \item{ EGELTM }{Planned Elapsed Time from Time Point Ref} \item{ EGTPTREF }{Time Point Reference} -\item{ temp }{undocumented field} \item{ TRTSDT }{Date of First Exposure to Treatment} \item{ TRTEDT }{Date of Last Exposure to Treatment} \item{ TRT01A }{Actual Treatment for Period 01} @@ -62,10 +61,10 @@ A data frame with 105 columns: \item{ TRTP }{Planned Treatment} \item{ TRTA }{Actual Treatment} \item{ ASEQ }{Analysis Sequence Number} -\item{ AVALCA1N }{Analysis Value Category 1 (N)} \item{ AVALCAT1 }{Analysis Value Category 1} -\item{ CHGCAT1N }{Change from Baseline Category 1 (N)} +\item{ AVALCA1N }{Analysis Value Category 1 (N)} \item{ CHGCAT1 }{Change from Baseline Category 1} +\item{ CHGCAT1N }{Change from Baseline Category 1 (N)} \item{ PARAM }{Parameter} \item{ PARAMN }{Parameter (N)} \item{ SUBJID }{Subject Identifier for the Study} @@ -101,12 +100,16 @@ A data frame with 105 columns: \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} \item{ DTHDT }{Date of Death} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -121,7 +124,7 @@ Generated from admiral package (template ad_adeg.R). adeg } \description{ -An example of ADEG ADaM dataset +Electrocardiogram Tests Analysis } \examples{ data("adeg") diff --git a/man/adex.Rd b/man/adex.Rd index 46416fa..14ca839 100644 --- a/man/adex.Rd +++ b/man/adex.Rd @@ -3,9 +3,9 @@ \docType{data} \name{adex} \alias{adex} -\title{Exposure Analysis} +\title{adex} \format{ -A data frame with 88 columns: +A data frame with 92 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ DOMAIN }{Domain Abbreviation} @@ -84,12 +84,16 @@ A data frame with 88 columns: \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} \item{ DTHDT }{Date of Death} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -104,7 +108,7 @@ Generated from admiral package (template ad_adex.R). adex } \description{ -An example of ADEX ADaM dataset +Exposure Analysis } \examples{ data("adex") diff --git a/man/adface_vaccine.Rd b/man/adface_vaccine.Rd index f97ffd1..b601b80 100644 --- a/man/adface_vaccine.Rd +++ b/man/adface_vaccine.Rd @@ -3,9 +3,9 @@ \docType{data} \name{adface_vaccine} \alias{adface_vaccine} -\title{Findings About Clinical Events Analysis} +\title{adface_vaccine} \format{ -A data frame with 60 columns: +A data frame with 61 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ USUBJID }{Unique Subject Identifier} @@ -67,6 +67,7 @@ A data frame with 60 columns: \item{ EVENTDFL }{Day Event Value Flag} \item{ ANL01FL }{Analysis Flag 01} \item{ ANL02FL }{Analysis Flag 02} +\item{ ANL03FL }{undocumented field} } } \source{ @@ -76,7 +77,7 @@ Generated from admiralvaccine package (template ad_adface.R). adface_vaccine } \description{ -An example of ADFACE for Vaccine studies +Findings About Clinical Events Analysis } \examples{ data("adface_vaccine") diff --git a/man/adis_vaccine.Rd b/man/adis_vaccine.Rd index 69032f0..2e2b681 100644 --- a/man/adis_vaccine.Rd +++ b/man/adis_vaccine.Rd @@ -3,7 +3,7 @@ \docType{data} \name{adis_vaccine} \alias{adis_vaccine} -\title{Immunogenicity Specimen Assessments} +\title{adis_vaccine} \format{ A data frame with 102 columns: \describe{ @@ -118,7 +118,7 @@ Generated from admiralvaccine package (template ad_adis.R). adis_vaccine } \description{ -An example of ADIS dataset for Vaccine studies +Immunogenicity Specimen Assessments } \examples{ data("adis_vaccine") diff --git a/man/adlb.Rd b/man/adlb.Rd index e23b885..22e728e 100644 --- a/man/adlb.Rd +++ b/man/adlb.Rd @@ -3,9 +3,9 @@ \docType{data} \name{adlb} \alias{adlb} -\title{Laboratory Analysis} +\title{adlb} \format{ -A data frame with 111 columns: +A data frame with 115 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ DOMAIN }{Domain Abbreviation} @@ -107,12 +107,16 @@ A data frame with 111 columns: \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} \item{ DTHDT }{Date of Death} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -127,7 +131,7 @@ Generated from admiral package (template ad_adlb.R). adlb } \description{ -An example of ADLB ADaM dataset +Laboratory Analysis } \examples{ data("adlb") diff --git a/man/adlbhy.Rd b/man/adlbhy.Rd index a6e16e7..8548fc3 100644 --- a/man/adlbhy.Rd +++ b/man/adlbhy.Rd @@ -3,7 +3,7 @@ \docType{data} \name{adlbhy} \alias{adlbhy} -\title{Analysis of Lab Hy's Law} +\title{adlbhy} \format{ A data frame with 14 columns: \describe{ @@ -30,7 +30,7 @@ Generated from admiral package (template ad_adlbhy.R). adlbhy } \description{ -A template of the ADLBHY dataset +Analysis of Lab Hy's Law } \examples{ data("adlbhy") diff --git a/man/admh.Rd b/man/admh.Rd index 3c1061f..a78a861 100644 --- a/man/admh.Rd +++ b/man/admh.Rd @@ -3,9 +3,9 @@ \docType{data} \name{admh} \alias{admh} -\title{Medical History Analysis} +\title{admh} \format{ -A data frame with 110 columns: +A data frame with 114 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ DOMAIN }{Domain Abbreviation} @@ -106,12 +106,16 @@ A data frame with 110 columns: \item{ EOSSTT }{End of Study Status} \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -126,7 +130,7 @@ Generated from admiral package (template ad_admh.R). admh } \description{ -A template of ADMH ADaM dataset +Medical History Analysis } \examples{ data("admh") diff --git a/man/adoe_ophtha.Rd b/man/adoe_ophtha.Rd index e4c2cb2..93d12f6 100644 --- a/man/adoe_ophtha.Rd +++ b/man/adoe_ophtha.Rd @@ -3,9 +3,9 @@ \docType{data} \name{adoe_ophtha} \alias{adoe_ophtha} -\title{Exam Analysis for Ophthalmology} +\title{adoe_ophtha} \format{ -A data frame with 98 columns: +A data frame with 102 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ DOMAIN }{Domain Abbreviation} @@ -94,12 +94,16 @@ A data frame with 98 columns: \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} \item{ DTHDT }{Date of Death} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -114,7 +118,7 @@ Generated from admiralophtha package (template ad_adoe.R). adoe_ophtha } \description{ -An example of ADOE dataset for Ophthalmology studies +Exam Analysis for Ophthalmology } \examples{ data("adoe_ophtha") diff --git a/man/adpc.Rd b/man/adpc.Rd index 21bb87f..0b179a2 100644 --- a/man/adpc.Rd +++ b/man/adpc.Rd @@ -3,9 +3,9 @@ \docType{data} \name{adpc} \alias{adpc} -\title{Pharmacokinetic Concentrations} +\title{adpc} \format{ -A data frame with 123 columns: +A data frame with 127 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ USUBJID }{Unique Subject Identifier} @@ -119,12 +119,16 @@ A data frame with 123 columns: \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} \item{ DTHDT }{Date of Death} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Under 30 Group} @@ -139,7 +143,7 @@ Generated from admiral package (template ad_adpc.R). adpc } \description{ -An example of ADPC dataset +Pharmacokinetic Concentrations } \examples{ data("adpc") diff --git a/man/adpp.Rd b/man/adpp.Rd index 761f336..acad6da 100644 --- a/man/adpp.Rd +++ b/man/adpp.Rd @@ -3,9 +3,9 @@ \docType{data} \name{adpp} \alias{adpp} -\title{Pharmacokinetic Parameters} +\title{adpp} \format{ -A data frame with 75 columns: +A data frame with 79 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ USUBJID }{Unique Subject Identifier} @@ -38,8 +38,8 @@ A data frame with 75 columns: \item{ VISIT }{Visit Name} \item{ TRTP }{Planned Treatment} \item{ TRTA }{Actual Treatment} -\item{ AVALCA1N }{Analysis Value Category 1 (N)} \item{ AVALCAT1 }{Analysis Value Category 1} +\item{ AVALCA1N }{Analysis Value Category 1 (N)} \item{ SUBJID }{Subject Identifier for the Study} \item{ RFSTDTC }{Subject Reference Start Date/Time} \item{ RFENDTC }{Subject Reference End Date/Time} @@ -71,12 +71,16 @@ A data frame with 75 columns: \item{ EOSSTT }{End of Study Status} \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -91,7 +95,7 @@ Generated from admiral package (template ad_adpp.R). adpp } \description{ -An example of ADPP ADaM dataset +Pharmacokinetic Parameters } \examples{ data("adpp") diff --git a/man/adppk.Rd b/man/adppk.Rd index 2ac85f9..a35f56e 100644 --- a/man/adppk.Rd +++ b/man/adppk.Rd @@ -3,7 +3,7 @@ \docType{data} \name{adppk} \alias{adppk} -\title{Population Pharmacokinetic} +\title{adppk} \format{ A data frame with 61 columns: \describe{ @@ -77,7 +77,7 @@ Generated from admiral package (template ad_adppk.R). adppk } \description{ -A template of ADPPK ADaM dataset +Population Pharmacokinetic } \examples{ data("adppk") diff --git a/man/adrs_onco.Rd b/man/adrs_onco.Rd index 523d051..e1255eb 100644 --- a/man/adrs_onco.Rd +++ b/man/adrs_onco.Rd @@ -3,7 +3,7 @@ \docType{data} \name{adrs_onco} \alias{adrs_onco} -\title{Tumor Response Analysis} +\title{adrs_onco} \format{ A data frame with 79 columns: \describe{ @@ -95,7 +95,7 @@ Generated from admiralonco package (template ad_adrs.R). adrs_onco } \description{ -An example of ADRS dataset for Oncology studies +Tumor Response Analysis } \examples{ data("adrs_onco") diff --git a/man/adsl.Rd b/man/adsl.Rd index 7c8d3ad..2c8b431 100644 --- a/man/adsl.Rd +++ b/man/adsl.Rd @@ -3,7 +3,7 @@ \docType{data} \name{adsl} \alias{adsl} -\title{Subject Level Analysis} +\title{adsl} \format{ A data frame with 54 columns: \describe{ @@ -70,7 +70,7 @@ Generated from admiral package (template ad_adsl.R). adsl } \description{ -An example of ADSL ADaM dataset +Subject Level Analysis } \examples{ data("adsl") diff --git a/man/adsl_vaccine.Rd b/man/adsl_vaccine.Rd index e719a1a..735adb7 100644 --- a/man/adsl_vaccine.Rd +++ b/man/adsl_vaccine.Rd @@ -3,7 +3,7 @@ \docType{data} \name{adsl_vaccine} \alias{adsl_vaccine} -\title{Subject Level Analysis for Vaccine} +\title{adsl_vaccine} \format{ A data frame with 46 columns: \describe{ @@ -62,7 +62,7 @@ Generated from admiralvaccine package (template ad_adsl.R). adsl_vaccine } \description{ -An example of ADSL ADaM dataset for Vaccine studies +Subject Level Analysis for Vaccine } \examples{ data("adsl_vaccine") diff --git a/man/adtr_onco.Rd b/man/adtr_onco.Rd index 9b5c861..e31e35f 100644 --- a/man/adtr_onco.Rd +++ b/man/adtr_onco.Rd @@ -3,7 +3,7 @@ \docType{data} \name{adtr_onco} \alias{adtr_onco} -\title{Tumor Results Analysis for Oncology} +\title{adtr_onco} \format{ A data frame with 99 columns: \describe{ @@ -115,7 +115,7 @@ Generated from admiralonco package (template ad_adtr.R). adtr_onco } \description{ -An example of ADTR ADaM dataset for Oncology studies +Tumor Results Analysis for Oncology } \examples{ data("adtr_onco") diff --git a/man/adtte_onco.Rd b/man/adtte_onco.Rd index c225b6e..be0427c 100644 --- a/man/adtte_onco.Rd +++ b/man/adtte_onco.Rd @@ -3,7 +3,7 @@ \docType{data} \name{adtte_onco} \alias{adtte_onco} -\title{Time to Event Analysis for Oncology} +\title{adtte_onco} \format{ A data frame with 20 columns: \describe{ @@ -36,7 +36,7 @@ Generated from admiralonco package (template ad_adtte.R). adtte_onco } \description{ -An example of ADTTE ADaM dataset for Oncology studies +Time to Event Analysis for Oncology } \examples{ data("adtte_onco") diff --git a/man/advfq_ophtha.Rd b/man/advfq_ophtha.Rd index afa66a4..1fa4161 100644 --- a/man/advfq_ophtha.Rd +++ b/man/advfq_ophtha.Rd @@ -3,9 +3,9 @@ \docType{data} \name{advfq_ophtha} \alias{advfq_ophtha} -\title{Visual Function Questionnaire Analysis} +\title{advfq_ophtha} \format{ -A data frame with 85 columns: +A data frame with 89 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ DOMAIN }{Domain Abbreviation} @@ -81,12 +81,16 @@ A data frame with 85 columns: \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} \item{ DTHDT }{Date of Death} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -101,7 +105,7 @@ Generated from admiralophtha package (template ad_advfq.R). advfq_ophtha } \description{ -An example of ADVFQ ADaM dataset for Ophthalmology studies +Visual Function Questionnaire Analysis } \examples{ data("advfq_ophtha") diff --git a/man/advs.Rd b/man/advs.Rd index 8ae3679..e7bd05e 100644 --- a/man/advs.Rd +++ b/man/advs.Rd @@ -3,9 +3,9 @@ \docType{data} \name{advs} \alias{advs} -\title{Vital Signs Analysis} +\title{advs} \format{ -A data frame with 101 columns: +A data frame with 105 columns: \describe{ \item{ STUDYID }{Study Identifier} \item{ DOMAIN }{Domain Abbreviation} @@ -60,8 +60,8 @@ A data frame with 101 columns: \item{ TRTP }{Planned Treatment} \item{ TRTA }{Actual Treatment} \item{ ASEQ }{Analysis Sequence Number} -\item{ AVALCA1N }{Analysis Value Category 1 (N)} \item{ AVALCAT1 }{Analysis Value Category 1} +\item{ AVALCA1N }{Analysis Value Category 1 (N)} \item{ PARAM }{Parameter} \item{ PARAMN }{Parameter (N)} \item{ SUBJID }{Subject Identifier for the Study} @@ -97,12 +97,16 @@ A data frame with 101 columns: \item{ FRVDT }{Final Retrievel Visit Date} \item{ RANDDT }{Date of Randomization} \item{ DTHDT }{Date of Death} +\item{ DTHDTF }{undocumented field} \item{ DTHADY }{Relative Day of Death} \item{ LDDTHELD }{Elapsed Days from Last Dose to Death} +\item{ DTHCAUS }{undocumented field} +\item{ DTHDOM }{undocumented field} +\item{ DTHCGR1 }{undocumented field} \item{ LSTALVDT }{Date Last Known Alive} -\item{ AGEGR1 }{Pooled Age Group 1} \item{ SAFFL }{Safety Population Flag} \item{ RACEGR1 }{Pooled Race Group 1} +\item{ AGEGR1 }{Pooled Age Group 1} \item{ REGION1 }{Geographic Region 1} \item{ LDDTHGR1 }{Last Dose to Death - Days Elapsed Grp 1} \item{ DTH30FL }{Death Within 30 Days of Last Trt Flag} @@ -117,7 +121,7 @@ Generated from admiral package (template ad_advs.R). advs } \description{ -An example of ADVS ADaM dataset +Vital Signs Analysis } \examples{ data("advs") diff --git a/man/advs_peds.Rd b/man/advs_peds.Rd new file mode 100644 index 0000000..435524a --- /dev/null +++ b/man/advs_peds.Rd @@ -0,0 +1,107 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/advs_peds.R +\docType{data} +\name{advs_peds} +\alias{advs_peds} +\title{advs_peds} +\format{ +A data frame with 80 columns: +\describe{ +\item{ STUDYID }{Study Identifier} +\item{ DOMAIN }{Domain Abbreviation} +\item{ USUBJID }{Unique Subject Identifier} +\item{ VSSEQ }{Sequence Number} +\item{ VSTESTCD }{Vital Signs Test Short Name} +\item{ VSTEST }{Vital Signs Test Name} +\item{ VSPOS }{Vital Signs Position of Subject} +\item{ VSORRES }{Result or Finding in Original Units} +\item{ VSORRESU }{Original Units} +\item{ VSSTRESC }{Character Result/Finding in Std Format} +\item{ VSSTRESN }{Numeric Result/Finding in Standard Units} +\item{ VSSTRESU }{Standard Units} +\item{ VSSTAT }{Completion Status} +\item{ VSLOC }{Location of Vital Signs Measurement} +\item{ VSBLFL }{Baseline Flag} +\item{ VISITNUM }{Visit Number} +\item{ VISIT }{Visit Name} +\item{ VISITDY }{Planned Study Day of Visit} +\item{ VSDTC }{Date/Time of Measurements} +\item{ VSDY }{Study Day of Vital Signs} +\item{ VSTPT }{Planned Time Point Name} +\item{ VSTPTNUM }{Planned Time Point Number} +\item{ VSELTM }{Planned Elapsed Time from Time Point Ref} +\item{ VSTPTREF }{Time Point Reference} +\item{ VSEVAL }{Evaluator} +\item{ EPOCH }{Epoch} +\item{ SEX }{Sex} +\item{ BRTHDTC }{Date/Time of Birth (Character)} +\item{ TRTSDT }{Date of First Exposure to Treatment} +\item{ TRTEDT }{Date of Last Exposure to Treatment} +\item{ TRT01A }{Actual Treatment for Period 01} +\item{ TRT01P }{Planned Treatment for Period 01} +\item{ BRTHDT }{Date/Time of Birth} +\item{ ADT }{Analysis Date} +\item{ ADY }{Analysis Relative Day} +\item{ AAGECUR }{Current Analysis Age (Days)} +\item{ AAGECURU }{Current Analysis Age Units} +\item{ PARAMCD }{Parameter Code} +\item{ AVAL }{Analysis Value} +\item{ ATPTN }{Analysis Timepoint (N)} +\item{ ATPT }{Analysis Timepoint} +\item{ AVISIT }{Analysis Visit} +\item{ AVISITN }{Analysis Visit (N)} +\item{ HGTTMP }{Temporary Height at Timepoint} +\item{ HGTTMPU }{Temporary Height at Timepoint Units} +\item{ PARAM }{Parameter} +\item{ PARAMN }{Parameter (N)} +\item{ ABLFL }{Baseline Record Flag} +\item{ BASE }{Baseline Value} +\item{ CHG }{Change from Baseline} +\item{ PCHG }{Percent Change from Baseline} +\item{ ONTRTFL }{On Treatment Record Flag} +\item{ ANL01FL }{Analysis Flag 01} +\item{ SUBJID }{Subject Identifier for the Study} +\item{ RFSTDTC }{Subject Reference Start Date/Time} +\item{ RFENDTC }{Subject Reference End Date/Time} +\item{ RFXSTDTC }{Date/Time of First Study Treatment} +\item{ RFXENDTC }{Date/Time of Last Study Treatment} +\item{ RFICDTC }{Date/Time of Informed Consent} +\item{ RFPENDTC }{Date/Time of End of Participation} +\item{ DTHDTC }{Date/Time of Death} +\item{ DTHFL }{Subject Death Flag} +\item{ SITEID }{Study Site Identifier} +\item{ AGE }{Age} +\item{ AGEU }{Age Units} +\item{ RACE }{Race} +\item{ ETHNIC }{Ethnicity} +\item{ ARMCD }{Planned Arm Code} +\item{ ARM }{Description of Planned Arm} +\item{ ACTARMCD }{Actual Arm Code} +\item{ ACTARM }{Description of Actual Arm} +\item{ COUNTRY }{Country} +\item{ DMDTC }{Date/Time of Collection} +\item{ DMDY }{Study Day of Collection} +\item{ TRTSDTM }{Datetime of First Exposure to Treatment} +\item{ TRTSTMF }{Time of First Exposure Imput. Flag} +\item{ TRTEDTM }{Datetime of Last Exposure to Treatment} +\item{ TRTETMF }{Time of Last Exposure Imput. Flag} +\item{ TRTDURD }{Total Treatment Duration (Days)} +\item{ ASEQ }{Analysis Sequence Number} +} +} +\source{ +Generated from admiralpeds package (template ad_advs.R). +} +\usage{ +advs_peds +} +\description{ +Vital Signs Analysis for Pediatrics +} +\examples{ +data("advs_peds") +} +\references{ +None +} +\keyword{datasets} diff --git a/man/pharmaverseadam-package.Rd b/man/pharmaverseadam-package.Rd index 0958d67..e9c3744 100644 --- a/man/pharmaverseadam-package.Rd +++ b/man/pharmaverseadam-package.Rd @@ -8,7 +8,7 @@ \description{ \if{html}{\figure{logo.png}{options: style='float: right' alt='logo' width='120'}} -A set of Analysis Data Model (ADaM) datasets constructed using the Study Data Tabulation Model (SDTM) datasets contained in the 'pharmaversesdtm' package and the template scripts from the 'admiral' family of packages. ADaM dataset specifications are described in: CDISC Analysis Data Model Team (2021) \url{https://www.cdisc.org/system/files/members/standard/foundational/ADaMIG_v1.3.pdf}. +A set of Analysis Data Model (ADaM) datasets constructed using the Study Data Tabulation Model (SDTM) datasets contained in the 'pharmaversesdtm' package and the template scripts from the 'admiral' family of packages. ADaM dataset specifications are described in the CDISC ADaM implementation guide, accessible by creating a free account on \url{https://www.cdisc.org/}. } \seealso{ Useful links: