From 7071cff5db29629142a40dd3d9c79ed09b402dca Mon Sep 17 00:00:00 2001
From: Aaron Petkau <aaron.petkau@gmail.com>
Date: Wed, 13 Dec 2023 19:07:58 -0600
Subject: [PATCH] Added check for session success

---
 .../src/main/nextflow/iridanext/IridaNextObserver.groovy    | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/plugins/nf-iridanext/src/main/nextflow/iridanext/IridaNextObserver.groovy b/plugins/nf-iridanext/src/main/nextflow/iridanext/IridaNextObserver.groovy
index 04b1202..6659d01 100644
--- a/plugins/nf-iridanext/src/main/nextflow/iridanext/IridaNextObserver.groovy
+++ b/plugins/nf-iridanext/src/main/nextflow/iridanext/IridaNextObserver.groovy
@@ -60,6 +60,7 @@ class IridaNextObserver implements TraceObserver {
     private String samplesMetadataId
     private Path iridaNextOutputPath
     private Boolean outputFileOverwrite
+    private Session session
 
     public IridaNextObserver() {
         pathMatchers = [:]
@@ -84,6 +85,8 @@ class IridaNextObserver implements TraceObserver {
 
     @Override
     void onFlowCreate(Session session) {
+        this.session = session
+
         iridaNextOutputPath = session.config.navigate('iridanext.output.path') as Path
         if (iridaNextOutputPath != null) {
             iridaNextOutputPath = Nextflow.file(iridaNextOutputPath) as Path
@@ -164,6 +167,9 @@ class IridaNextObserver implements TraceObserver {
 
     @Override
     void onFlowComplete() {
+        if (!session.isSuccess())
+            return
+
         // Generate files section
         // Some of this code derived from https://github.com/nextflow-io/nf-prov/blob/master/plugins/nf-prov
         tasks.each { task ->