From be8a6323840e720a47ea18d8d0490f893973949d Mon Sep 17 00:00:00 2001
From: Matthew Wells <76452933+mattheww95@users.noreply.github.com>
Date: Fri, 5 Apr 2024 15:40:32 -0500
Subject: [PATCH] Update gas_nomenclature.nf

reverted the `prepareFilePaths` function to use `file` instead of path
---
 workflows/gas_nomenclature.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflows/gas_nomenclature.nf b/workflows/gas_nomenclature.nf
index a0befa9..4691ae8 100644
--- a/workflows/gas_nomenclature.nf
+++ b/workflows/gas_nomenclature.nf
@@ -53,7 +53,7 @@ def prepareFilePath(String filep, GString debug_msg){
     // Rerturns null if a file is not valid
     def return_path = null
     if(filep){
-        file_in = path(filep)
+        file_in = file(filep)
         if(file_in.exists()){
             return_path = file_in
             log.debug debug_msg