diff --git a/CHANGELOG.md b/CHANGELOG.md index 4b7a138..89b82db 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,12 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## Unreleased + +### `Changed` + +- Removed `quay.io` docker repository tags from modules [PR19](https://github.com/phac-nml/gasnomenclature/pull/19) + ## [0.1.0] - 2024/06/28 Initial release of the Genomic Address Nomenclature pipeline to be used to assign cluster addresses to samples based on an existing cluster designations. diff --git a/modules/local/gas/call/main.nf b/modules/local/gas/call/main.nf index 3216c9e..4832e35 100644 --- a/modules/local/gas/call/main.nf +++ b/modules/local/gas/call/main.nf @@ -6,7 +6,7 @@ process GAS_CALL{ container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/genomic_address_service%3A0.1.1--pyh7cba7a3_1' : - 'quay.io/biocontainers/genomic_address_service:0.1.1--pyh7cba7a3_1' }" + 'biocontainers/genomic_address_service:0.1.1--pyh7cba7a3_1' }" input: diff --git a/modules/local/locidex/merge/main.nf b/modules/local/locidex/merge/main.nf index 7721625..226ba1f 100644 --- a/modules/local/locidex/merge/main.nf +++ b/modules/local/locidex/merge/main.nf @@ -6,7 +6,7 @@ process LOCIDEX_MERGE { container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/locidex:0.1.1--pyhdfd78af_0' : - 'quay.io/biocontainers/locidex:0.1.1--pyhdfd78af_0' }" + 'biocontainers/locidex:0.1.1--pyhdfd78af_0' }" input: path input_values // [file(sample1), file(sample2), file(sample3), etc...] diff --git a/modules/local/profile_dists/main.nf b/modules/local/profile_dists/main.nf index f43d63b..b6b92de 100644 --- a/modules/local/profile_dists/main.nf +++ b/modules/local/profile_dists/main.nf @@ -4,7 +4,7 @@ process PROFILE_DISTS{ container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/profile_dists%3A1.0.0--pyh7cba7a3_0' : - 'quay.io/biocontainers/profile_dists:1.0.0--pyh7cba7a3_0' }" + 'biocontainers/profile_dists:1.0.0--pyh7cba7a3_0' }" input: path query