From df7c748897a5f1bec6df375e38243bbfcae0a161 Mon Sep 17 00:00:00 2001 From: kylacochrane Date: Thu, 27 Jun 2024 13:52:06 -0400 Subject: [PATCH 1/2] Updating docs for release --- CHANGELOG.md | 2 +- nextflow.config | 2 +- tests/data/samplesheets/samplesheet-hash_missing.csv | 4 ++-- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 2ede076..fb91fcd 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## 0.1.0 - 2024/06/18 +## 0.1.0 - 2024/06/28 Initial release of the Genomic Address Nomenclature pipeline to be used to assign cluster addresses to samples based on an existing cluster designations. diff --git a/nextflow.config b/nextflow.config index 9734b66..423d59c 100644 --- a/nextflow.config +++ b/nextflow.config @@ -219,7 +219,7 @@ manifest { description = """Gas Nomenclature assignment pipeline""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = 'v0.0.1dev' + version = '0.1.0' doi = '' defaultBranch = 'main' } diff --git a/tests/data/samplesheets/samplesheet-hash_missing.csv b/tests/data/samplesheets/samplesheet-hash_missing.csv index bce4982..7bfe7af 100644 --- a/tests/data/samplesheets/samplesheet-hash_missing.csv +++ b/tests/data/samplesheets/samplesheet-hash_missing.csv @@ -1,5 +1,5 @@ sample,mlst_alleles,address sampleQ,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sampleQ.mlst.json, sample1,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample1.mlst.json,1 -sample2,https://raw.githubusercontent.com/phac-nml/gasnomenclature/add_tests/tests/data/reports/sample2_missing.mlst.json,1 -sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/add_tests/tests/data/reports/sample3_missing.mlst.json,2 +sample2,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample2_missing.mlst.json,1 +sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample3_missing.mlst.json,2 From 32b88c50ab20815f1d61b030d41d51bed405f824 Mon Sep 17 00:00:00 2001 From: kylacochrane Date: Thu, 27 Jun 2024 14:05:09 -0400 Subject: [PATCH 2/2] Add link to release to CHANGELOG.md --- CHANGELOG.md | 8 ++------ 1 file changed, 2 insertions(+), 6 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index fb91fcd..4b7a138 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## 0.1.0 - 2024/06/28 +## [0.1.0] - 2024/06/28 Initial release of the Genomic Address Nomenclature pipeline to be used to assign cluster addresses to samples based on an existing cluster designations. @@ -12,8 +12,4 @@ Initial release of the Genomic Address Nomenclature pipeline to be used to assig - Input of cg/wgMLST allele calls produced from [locidex](https://github.com/phac-nml/locidex). - Output of assigned cluster addresses for any **query** samples using [profile_dists](https://github.com/phac-nml/profile_dists) and [gas call](https://github.com/phac-nml/genomic_address_service). -### `Fixed` - -### `Dependencies` - -### `Deprecated` +[0.1.0]: https://github.com/phac-nml/gasnomenclature/releases/tag/0.1.0