diff --git a/CHANGELOG.md b/CHANGELOG.md index 2ede076..4b7a138 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## 0.1.0 - 2024/06/18 +## [0.1.0] - 2024/06/28 Initial release of the Genomic Address Nomenclature pipeline to be used to assign cluster addresses to samples based on an existing cluster designations. @@ -12,8 +12,4 @@ Initial release of the Genomic Address Nomenclature pipeline to be used to assig - Input of cg/wgMLST allele calls produced from [locidex](https://github.com/phac-nml/locidex). - Output of assigned cluster addresses for any **query** samples using [profile_dists](https://github.com/phac-nml/profile_dists) and [gas call](https://github.com/phac-nml/genomic_address_service). -### `Fixed` - -### `Dependencies` - -### `Deprecated` +[0.1.0]: https://github.com/phac-nml/gasnomenclature/releases/tag/0.1.0 diff --git a/nextflow.config b/nextflow.config index 9734b66..423d59c 100644 --- a/nextflow.config +++ b/nextflow.config @@ -219,7 +219,7 @@ manifest { description = """Gas Nomenclature assignment pipeline""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = 'v0.0.1dev' + version = '0.1.0' doi = '' defaultBranch = 'main' } diff --git a/tests/data/samplesheets/samplesheet-hash_missing.csv b/tests/data/samplesheets/samplesheet-hash_missing.csv index bce4982..7bfe7af 100644 --- a/tests/data/samplesheets/samplesheet-hash_missing.csv +++ b/tests/data/samplesheets/samplesheet-hash_missing.csv @@ -1,5 +1,5 @@ sample,mlst_alleles,address sampleQ,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sampleQ.mlst.json, sample1,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample1.mlst.json,1 -sample2,https://raw.githubusercontent.com/phac-nml/gasnomenclature/add_tests/tests/data/reports/sample2_missing.mlst.json,1 -sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/add_tests/tests/data/reports/sample3_missing.mlst.json,2 +sample2,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample2_missing.mlst.json,1 +sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample3_missing.mlst.json,2