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poly-G trimming with Fastp #26

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OksanaVe opened this issue Aug 14, 2024 · 0 comments
Open

poly-G trimming with Fastp #26

OksanaVe opened this issue Aug 14, 2024 · 0 comments

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@OksanaVe
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Fastp doesn't recognize newer 2-channel SBS chemistry Illumina platforms and doesn't trim polyG at the end of the reads. So QC'd reads in the pipeline retain polyG artifacts. Adding -g flag should fix the issue by forcing >10xG tail trimming. Or we could raise an issue in Fastp project to update their screening for newer Illumina platforms

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