From b0e10b9d6d57094eed92b9cb849b1a8f70c27ce2 Mon Sep 17 00:00:00 2001
From: Alex Leonard <alexander.leonard@usys.ethz.ch>
Date: Tue, 12 Nov 2024 08:42:36 +0100
Subject: [PATCH] Fix: use output of previous smoothing iteration as input for
 next

---
 src/main.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/main.cpp b/src/main.cpp
index b3d47e7..ca3bc0f 100644
--- a/src/main.cpp
+++ b/src/main.cpp
@@ -429,7 +429,7 @@ int main(int argc, char **argv) {
                             gfa_in_name = args::get(tmp_base) + '/' + filename + ".prep." + std::to_string(current_iter) + ".gfa";
                         }
                         std::cerr << smoothxg_iter << "::main] prepping graph for smoothing" << std::endl;
-                        smoothxg::prep(args::get(gfa_in), gfa_in_name, node_chop,
+                        smoothxg::prep(path_input_gfa, gfa_in_name, node_chop,
                                     term_updates, true, temp_file::get_dir() + '/', n_threads,
                                     smoothxg_iter);
                     } else {