From 00e635b6e0fb63066643fcf01b348688f6d4a558 Mon Sep 17 00:00:00 2001
From: Kaichi Huang <hkchi@users.noreply.github.com>
Date: Fri, 29 Nov 2019 21:28:52 -0800
Subject: [PATCH] Correct gvcf2fasta_nogaps.pl

Depth info should be the third field
---
 perl_tools/gvcf2fasta_nogaps.pl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/perl_tools/gvcf2fasta_nogaps.pl b/perl_tools/gvcf2fasta_nogaps.pl
index 01d3a61..47a8c52 100644
--- a/perl_tools/gvcf2fasta_nogaps.pl
+++ b/perl_tools/gvcf2fasta_nogaps.pl
@@ -33,7 +33,7 @@
   }
   my $info = $a[9];
   my @infos = split(/:/,$info);
-  my $depth = $infos[3];
+  my $depth = $infos[2];
   my $call = $infos[0];
   my @calls;
   if ($call =~ /\//){