Repositories list

• mpoxseir

  Public
  C++

  •

  Other

  •0•1•14•2•Updated Jan 10, 2025Jan 10, 2025

• priority-pathogens

  Public
  https://mrc-ide.github.io/priority-pathogens/

  R

  •

  Creative Commons Zero v1.0 Universal

  •2•6•18•3•Updated Jan 10, 2025Jan 10, 2025

• monty

  Public
  R

  •

  Other

  •0•3•2•3•Updated Jan 10, 2025Jan 10, 2025

• grout-deploy

  Public
  Deployment tool for grout

  0•0•0•1•Updated Jan 10, 2025Jan 10, 2025

• orderly.runner

  Public
  R

  •

  Other

  •0•0•0•5•Updated Jan 10, 2025Jan 10, 2025

• packit

  Public
  Web app for serving outpack and/or orderly2 metadata

  TypeScript

  •

  MIT License

  •1•1•0•2•Updated Jan 10, 2025Jan 10, 2025

• popim

  Public
  POPulation IMmunity

  R

  •

  Other

  •0•1•0•0•Updated Jan 10, 2025Jan 10, 2025

• foresite-orderly

  Public
  Orderly implementation of foresite malaria site files

  R

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• Tapestry

  Public
  C++

  •

  MIT License

  •2•1•0•1•Updated Jan 10, 2025Jan 10, 2025

• epireview

  Public
  R

  •

  Other

  •2•30•24•0•Updated Jan 9, 2025Jan 9, 2025

• odin-monty

  Public
  TeX

  •0•0•2•1•Updated Jan 9, 2025Jan 9, 2025

• malariasimulation

  Public
  The malaria model

  R

  •

  Other

  •15•16•38•5•Updated Jan 9, 2025Jan 9, 2025

• wodin

  Public
  odin on the web

  TypeScript

  •0•0•1•4•Updated Jan 9, 2025Jan 9, 2025

• wodin-shortcourse-2024

  Public
  Introduction to Mathematical Models of the Epidemiology & Control of Infectious Diseases - 2024

  R

  •0•1•0•0•Updated Jan 8, 2025Jan 8, 2025

• wodin-gambia-idm-2024

  Public
  R

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• wodin-msc-idm-2024

  Public
  R

  •0•1•0•0•Updated Jan 8, 2025Jan 8, 2025

• wodin-demo-config

  Public
  HTML

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• noticeboard

  Public
  DIDE noticeboard website

  HTML

  •3•0•0•1•Updated Jan 8, 2025Jan 8, 2025

• wodin-epimodels

  Public
  Shell

  •0•0•0•1•Updated Jan 8, 2025Jan 8, 2025

• YEP

  Public
  A package for running a dynamic SEIRV model of yellow fever and inferring model parameters

  R

  •

  MIT License

  •1•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• PGEforge

  Public
  A community-driven resource for enhancing Plasmodium genomic epidemiology analysis

  JavaScript

  •

  MIT License

  •0•2•1•1•Updated Jan 7, 2025Jan 7, 2025

• epireviewdb

  Public
  Database for {epireview}

  R

  •0•1•0•0•Updated Jan 7, 2025Jan 7, 2025

• ivRmectin

  Public
  Malaria modelling framework to assess the impact of endectocide interventions

  C

  •1•1•0•1•Updated Jan 7, 2025Jan 7, 2025

• grout

  Public
  Geo tile server

  TypeScript

  •0•0•0•1•Updated Jan 7, 2025Jan 7, 2025

• naomi

  Public
  Naomi model for subnational HIV estimation

  R

  •

  Other

  •9•9•40•5•Updated Jan 6, 2025Jan 6, 2025

• orderly2

  Public
  R

  •

  Other

  •2•8•10•1•Updated Jan 6, 2025Jan 6, 2025

• naomi.options

  Public
  R

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  Other

  •0•0•0•1•Updated Jan 2, 2025Jan 2, 2025

• wastewatchR

  Public
  Branching-process based framework to evaluate the utility of wastewater-based surveillance for emerging pathogens.

  R

  •0•2•0•0•Updated Dec 31, 2024Dec 31, 2024

• mpoxRingVax

  Public
  R

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  GNU General Public License v3.0

  •0•1•0•0•Updated Dec 30, 2024Dec 30, 2024

• STAVE

  Public
  Spatial-temporal aggregate variant encoding

  R

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  Other

  •0•1•1•0•Updated Dec 22, 2024Dec 22, 2024