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@epi2me-labs EPI2ME Labs

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    36 repositories

    • epi2me-docs

      Public
      HTML
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • epi2me-labs.github.io

      Public
      HTML
      •2•8•0•0•Updated Jan 7, 2025Jan 7, 2025

    • wf-template

      Public
      Nextflow workflow template repository
      Python
      •
      Other
      •31•16•1•0•Updated Jan 6, 2025Jan 6, 2025

    • wf-transcriptomes

      Public
      Nextflow
      •
      Other
      •34•79•16•0•Updated Jan 3, 2025Jan 3, 2025

    • wf-single-cell

      Public
      Python
      •
      Other
      •41•77•12•0•Updated Jan 3, 2025Jan 3, 2025

    • wf-bacterial-genomes

      Public
      Small variant calling for haploid samples
      Python
      •
      Other
      •10•28•8•0•Updated Jan 2, 2025Jan 2, 2025

    • wf-human-variation

      Public
      Nextflow
      •
      Other
      •49•108•22•0•Updated Dec 19, 2024Dec 19, 2024

    • wf-clone-validation

      Public
      Python
      •
      Other
      •20•27•3•0•Updated Dec 19, 2024Dec 19, 2024

    • wf-basecalling

      Public
      Nextflow
      •
      Other
      •17•35•12•1•Updated Dec 19, 2024Dec 19, 2024

    • wf-metagenomics

      Public
      Metagenomic classification of long-read sequencing data
      Python
      •
      Other
      •23•68•4•0•Updated Dec 18, 2024Dec 18, 2024

    • wf-amplicon

      Public
      Python
      •
      Other
      •6•26•3•0•Updated Dec 18, 2024Dec 18, 2024

    • ezcharts

      Public
      Python
      •
      Other
      •0•18•0•0•Updated Dec 18, 2024Dec 18, 2024

    • wf-16s

      Public
      Nextflow
      •
      Other
      •5•25•0•0•Updated Dec 16, 2024Dec 16, 2024

    • wf-somatic-variation

      Public
      Nextflow
      •
      Other
      •10•16•7•0•Updated Dec 16, 2024Dec 16, 2024

    • wf-cas9

      Public
      Nextflow
      •
      Other
      •2•6•3•0•Updated Dec 16, 2024Dec 16, 2024

    • wf-aav-qc

      Public
      Python
      •
      Other
      •8•5•6•0•Updated Dec 16, 2024Dec 16, 2024

    • fastcat

      Public
      Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
      C
      •
      Other
      •4•33•1•0•Updated Dec 5, 2024Dec 5, 2024

    • wf-artic

      Public
      ARTIC SARS-CoV-2 workflow and reporting
      Nextflow
      •
      Other
      •35•49•5•0•Updated Dec 3, 2024Dec 3, 2024

    • wf-flu

      Public
      Nextflow
      •
      Other
      •5•17•2•0•Updated Nov 25, 2024Nov 25, 2024

    • wf-alignment

      Public
      Nextflow
      •
      Other
      •21•26•4•0•Updated Nov 19, 2024Nov 19, 2024

    • wf-tb-amr

      Public
      Python
      •
      Other
      •0•3•0•0•Updated Oct 18, 2024Oct 18, 2024

    • wf-mpx

      Public
      Nextflow
      •
      Other
      •6•4•1•0•Updated Sep 16, 2024Sep 16, 2024

    • wf-pore-c

      Public
      Nextflow
      •
      Other
      •9•36•4•0•Updated Sep 15, 2024Sep 15, 2024

    • modbam2bed

      Public
      C
      •
      Other
      •8•48•0•0•Updated Aug 23, 2024Aug 23, 2024

    • wf-hereditary-cancer

      Public
      Nextflow
      •
      Other
      •0•1•1•0•Updated Aug 21, 2024Aug 21, 2024

    • bed-bugs

      Public
      bed-bugs website
      JavaScript
      •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • pore-c-py

      Public
      Python
      •
      Other
      •4•12•1•0•Updated Aug 14, 2024Aug 14, 2024

    • pychopper

      Public
      cDNA read preprocessing
      Python
      •
      Other
      •9•62•5•0•Updated Jul 25, 2024Jul 25, 2024

    • wf-installation-qualification

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Feb 21, 2024Feb 21, 2024

    • kraken2-server

      Public
      Kraken2 Server
      C++
      •
      Other
      •3•21•1•0•Updated Jan 23, 2024Jan 23, 2024