Repositories list

• RIO

  Public
  Risk Identification Ontology (RIO) provides a framework for risk specification and reasoning.

  1•0•1•2•Updated Feb 7, 2025Feb 7, 2025

• gfo-light

  Public
  GFO-light contains simplifications compared to the full version of GFO and is designed as a framework for the efficient development and foundation of domain/application ontologies.

  ontologytop-level-ontologyontology-languages

  Creative Commons Attribution 4.0 International

  •0•0•2•0•Updated Feb 7, 2025Feb 7, 2025

• GFO

  Public
  The General Formal Ontology is a top-level ontology for conceptual modeling. It includes elaborations of categories like objects, processes, time and space, properties, relations, roles, functions, facts, and situations.

  ontologytop-level-ontologyontology-languages

  Creative Commons Attribution 4.0 International

  •3•7•7•1•Updated Feb 7, 2025Feb 7, 2025

• w3id.org

  Public
  Website source code for w3id.org.

  HTML

  •1.3k•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• top-backend

  Public
  Spring Boot based backend of the TOP Framework

  spring-bootphenotyping

  Java

  •

  MIT License

  •1•0•12•2•Updated Feb 3, 2025Feb 3, 2025

• top-frontend

  Public
  JavaScript based frontend of the TOP Framework

  vuejstypescriptquasar-framework

  Vue

  •

  MIT License

  •1•0•4•1•Updated Feb 3, 2025Feb 3, 2025

• SMOG

  Public
  Spreadsheet Model Generator (SMOG): A Lightweight Tool for Object-Spreadsheet Mapping

  ontologiesspreadsheet-mapping

  Java

  •

  MIT License

  •1•2•1•0•Updated Feb 3, 2025Feb 3, 2025

• top-deployment

  Public
  Deployment instructions and resources for the TOP Framework

  dockerphenotyping

  Smarty

  •

  MIT License

  •3•0•6•0•Updated Feb 3, 2025Feb 3, 2025

• top-api

  Public
  REST API of the TOP Framework

  phenotypingopenapi-specification

  Dockerfile

  •

  MIT License

  •1•0•4•0•Updated Jan 22, 2025Jan 22, 2025

• concept-graphs

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•3•0•Updated Jan 20, 2025Jan 20, 2025

• top.de

  Public
  early draft of the web page for the TOP research group

  CSS

  •

  MIT License

  •0•0•2•0•Updated Dec 11, 2024Dec 11, 2024

• top-data-import

  Public
  A component of the TOP Framework to convert and import LIFE study data.

  Java

  •

  MIT License

  •0•0•1•0•Updated Nov 26, 2024Nov 26, 2024

• .github

  Public
  Contains a detailed description of the Onto-Med Research Group organization

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 5, 2024Sep 5, 2024

• COP

  Public
  Core Ontology of Phenotyping

  ontologyphenotypingphenotype+ 2phenotype-exchange-formatphenotyping-algorithms

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

• BISON

  Public
  This repository contains the OWL files of the BIOPASS Situation Ontology.

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• gmds2024-evaluation

  Public
  Java

  •0•0•0•0•Updated Jun 25, 2024Jun 25, 2024

• bubastis-semlex

  Public
  Bubastis is an ontology diff tool

  Java

  •

  Apache License 2.0

  •4•0•0•0•Updated Jun 21, 2024Jun 21, 2024

• top-example-db

  Public
  Very simple example for a database holding subject data. The data can be accessed via the TOP Framework.

  dockerpostgresql

  R

  •

  MIT License

  •0•0•0•0•Updated Feb 27, 2024Feb 27, 2024

• GFO-2.0

  Public
  General Formal Ontology (GFO) 2.0

  0•1•1•0•Updated Jan 12, 2023Jan 12, 2023

• OntoBrowser-Docker

  Public
  Dockerized OntoBrowser

  docker

  Dockerfile

  •0•0•0•0•Updated Apr 22, 2022Apr 22, 2022

• yolov5

  Public
  YOLOv5 in PyTorch > ONNX > CoreML > TFLite

  Python

  •

  GNU General Public License v3.0

  •17k•0•0•0•Updated Jun 5, 2021Jun 5, 2021

• OWL2GraphML

  Public
  Generates GraphML from OWL ontologies

  ontologyprotegegraphml

  Java

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Apr 30, 2021Apr 30, 2021

• PhenoMan-Editor

  Public
  GUI to build and modify Phenotype Algorithm Specification Ontologies

  guiowlphenotype-ontologies

  Java

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Sep 14, 2020Sep 14, 2020

• example-study-graphql-app

  Public
  Mojolicious webapp with GraphQL to provided an API to browse study metadata

  Perl

  •0•0•0•0•Updated Aug 26, 2020Aug 26, 2020

• phenoman-evaluation

  Public
  Evaluation of the PhenoMan API with synthetic FHIR data

  ontologyphenotypingsynthea+ 1eligibility-query

  Shell

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Jul 8, 2020Jul 8, 2020

• SOLID

  Public
  A Drupal 8 Module to import OWL ontologies into Drupal.

  PHP

  •

  GNU General Public License v3.0

  •0•0•3•0•Updated Oct 24, 2018Oct 24, 2018

• binaryowl

  Public
  A compact fast to parse and render format for OWL 2

  Java

  •

  GNU Lesser General Public License v3.0

  •5•0•0•0•Updated Aug 11, 2017Aug 11, 2017