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    38 repositories

    • niagads-api

      Public
      Specification and Implementation of the NIAGADS API
      api-rest
      Python
      •
      GNU General Public License v3.0
      •0•2•0•1•Updated Jan 28, 2025Jan 28, 2025

    • AnnotatedVDB

      Public
      GenomicsDB / Annotated Variant Microservice
      genomicsdb
      Python
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • GenomicsDBData

      Public
      code for populating and managing GenomicsDB Database
      genomicsdb
      Perl
      •0•0•3•0•Updated Jan 28, 2025Jan 28, 2025

    • niagads-pylib

      Public
      collection of python libraries and utils in support of NIAGADS projects
      Python
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Jan 24, 2025Jan 24, 2025

    • nextjs-template

      Public template
      template repository for NIAGADS next.js sites
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • igv.js

      Public
      NIAGADS Customized Embeddable genomic visualization component based on the Integrative Genomics Viewer
      reactjavascriptvizualisation
      HTML
      •
      MIT License
      •232•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • metadata

      Public
      metadata templates and validators
      metadatametadata-parsermetadata-standard
      HTML
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jan 21, 2025Jan 21, 2025

    • GenomicsDBWebsite

      Public
      model and front-end template for the NIAGADS GenomicsDB
      genomicsdb
      TypeScript
      •
      GNU Lesser General Public License v2.1
      •1•3•31•0•Updated Jan 14, 2025Jan 14, 2025

    • genomicsdb-monorepo

      Public
      NIAGADS GenomicsDB
      MIT License
      •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • niagads-viz-js

      Public
      NIAGADS visualizations
      reactvisualizationjavascript-library
      TypeScript
      •
      GNU General Public License v3.0
      •0•0•10•0•Updated Dec 18, 2024Dec 18, 2024

    • niagads-igv-webapp

      Public archive
      Standalone webapp for NIAGADS customized IGV Genome Browser
      reactvisualizationjavascript
      TypeScript
      •
      GNU General Public License v3.0
      •1•1•5•0•Updated Dec 5, 2024Dec 5, 2024

    • niagads-api-client

      Public
      NIAGADS API - Front End (next.js)
      TypeScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • example

      Public
      example projects leveraging NIAGADS Open Access Software Tools and API endpoints
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • export-from-json

      Public
      Export to plain text, css, html, json, csv, xls, xml files from JSON.
      TypeScript
      •
      MIT License
      •33•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • niagads-api-slate-docs

      Public template
      Beautiful static documentation for your API
      SCSS
      •
      Apache License 2.0
      •22k•0•0•0•Updated Jul 26, 2024Jul 26, 2024

    • common-ground

      Public
      Best Practices Guildelines and Recommended Software / Software Configurations for NIAGADS developers
      MIT License
      •0•0•0•0•Updated Apr 8, 2024Apr 8, 2024

    • gosling.js

      Public
      Grammar of Scalable Linked Interactive Nucleotide Graphics
      TypeScript
      •
      MIT License
      •29•0•0•0•Updated Mar 22, 2024Mar 22, 2024

    • ADSPIntegratedPhenotypes

      Public
      This script is intended to provide approved users of the Alzheimer’s Disease Sequencing Project (ADSP) dataset (ng00067) with a starting point for combining and using sample and phenotype information to generate a genetically unique list of whole genome samples to use in an Alzheimer’s Disease case/control analysis.
      R
      •0•1•0•0•Updated Dec 11, 2023Dec 11, 2023

    • WDKClient

      Public
      JavaScript
      •
      Apache License 2.0
      •4•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • WDK

      Public
      Java
      •
      Apache License 2.0
      •4•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • sphinx-action

      Public
      Github action that builds docs using sphinx and places errors inline
      Python
      •
      Apache License 2.0
      •118•0•0•0•Updated Oct 17, 2023Oct 17, 2023

    • EbrcWebsiteCommon

      Public
      JavaScript
      •
      Apache License 2.0
      •3•0•0•0•Updated Aug 24, 2023Aug 24, 2023

    • metadata-tools

      Public
      metadata
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Apr 27, 2023Apr 27, 2023

    • install

      Public
      Shell
      •
      Apache License 2.0
      •2•0•0•0•Updated Apr 7, 2023Apr 7, 2023

    • GusAppFramework

      Public
      Perl
      •
      Apache License 2.0
      •2•0•0•0•Updated Feb 21, 2023Feb 21, 2023

    • CBIL

      Public
      Perl
      •
      Apache License 2.0
      •3•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • FgpUtil

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated Sep 14, 2022Sep 14, 2022

    • EbrcWebSvcCommon

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated Sep 14, 2022Sep 14, 2022

    • WSF

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated Sep 14, 2022Sep 14, 2022

    • EbrcModelCommon

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated Sep 14, 2022Sep 14, 2022