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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=yes">
<meta name="description" content="Open NeuroPET project description, BIDS standard">
<meta name="author" content="Dr Cyril Pernet">
<link href="https://fonts.googleapis.com/css?family=Raleway:100,200,300,400,500,600,700,800,900&display=swap" rel="stylesheet">
<title>OpenNeuro PET</title>
<!--
Based on Breezed Template
https://templatemo.com/tm-543-breezed
-->
<!-- Additional CSS Files -->
<link rel="stylesheet" type="text/css" href="assets/css/bootstrap.min.css">
<link rel="stylesheet" type="text/css" href="assets/css/font-awesome.css">
<link rel="stylesheet" href="assets/css/templatemo-breezed.css">
<link rel="stylesheet" href="assets/css/owl-carousel.css">
<link rel="stylesheet" href="assets/css/lightbox.css">
</head>
<body>
<!-- ***** Preloader Start ***** -->
<div id="preloader">
<div class="jumper">
<div></div>
<div></div>
<div></div>
</div>
</div>
<!-- ***** Preloader End ***** -->
<!-- ***** Header Area Start ***** -->
<header class="header-area header-sticky">
<div class="container">
<div class="row">
<div class="col-12">
<nav class="main-nav">
<!-- ***** Logo Start ***** -->
<a href="index.html" class="logo">
Open NeuroPET
</a>
<!-- ***** Logo End ***** -->
<!-- ***** Menu Start ***** -->
<ul class="nav">
<li class="scroll-to-section"><a href="#top" class="active">Home</a></li>
<li class="scroll-to-section"><a href="#about">About</a></li>
<li class="submenu">
<a href="javascript:;">Activities</a>
<ul>
<li><a href="#projects">At a glance</a></li>
<li><a href="outreach_activities.html"
target="_blank"> Talks, BrainHack, courses</a></li>
</ul>
</li>
<li class="submenu">
<a href="javascript:;">Work with Open Data</a>
<ul>
<li><a href="https://openneuro.org/search/modality/pet/" target="_blank">Browse DataSets</a></li>
<li><a href="https://public-neuro.github.io/" target="_blank">Join the EU repository</a></li>
<li><a href="https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/09-positron-emission-tomography.html"
target="_blank"> Check the BIDS specification</a></li>
<li><a href="https://github.com/openneuropet/templates" target="_blank">Access our templates</a></li>
</ul>
</li>
<li class="scroll-to-section"><a href="#contact-us">Contact Us</a></li>
<div class="search-icon">
<a href="#search"><i class="fa fa-search"></i></a>
</div>
</ul>
<a class='menu-trigger'>
<span>Menu</span>
</a>
<!-- ***** Menu End ***** -->
</nav>
</div>
</div>
</div>
</header>
<!-- ***** Header Area End ***** -->
<!-- ***** Search Area ***** -->
<div id="search">
<button type="button" class="close">×</button>
<form id="contact" action="#" method="get">
<fieldset>
<input type="search" name="q" placeholder="SEARCH KEYWORD(s)" aria-label="Search through site content">
</fieldset>
<fieldset>
<button type="submit" class="main-button">Search</button>
</fieldset>
</form>
</div>
<!-- ***** Main Banner Area Start ***** -->
<div class="main-banner header-text" id="top">
<div class="Modern-Slider">
<!-- Item -->
<div class="item">
<div class="img-fill">
<img src="assets/images/slide-01.jpg" alt="">
<div class="text-content">
<h3>Welcome to Open NeuroPET</h3>
<h5>Share, Curate and Analyze </br> Brain Positron Emission Tomography Data</h5>
<a href="#about" class="main-stroked-button">Learn More</a>
<a href="https://public-neuro.github.io/" target="_blank"
class="main-filled-button">Share securly EU Data</a>
<a href="https://openneuro.org/search/modality/pet" target="_blank" class="main-filled-button">Access Data</a>
</div>
</div>
</div>
<!-- // Item -->
<!-- Item -->
<div class="item">
<div class="img-fill">
<img src="assets/images/slide-02.jpg" alt="">
<div class="text-content">
<h3>Data Curation made easy</h3>
<h5>Automated Data Curation and Validation</h5>
<a href="https://bids-specification.readthedocs.io/en/stable/" target="_blank" class="main-stroked-button">Check the BIDS Specification</a>
<a href="https://github.com/openneuropet/BIDS-converter" target="_blank" class="main-filled-button">Access tools</a>
</div>
</div>
</div>
<!-- // Item -->
<!-- Item -->
<div class="item">
<div class="img-fill">
<img src="assets/images/slide-03.jpg" alt="">
<div class="text-content">
<h3>Brain PET analysis pipelines</h3>
<h5>Share and get automated QC </br> or run your own analyses</h5>
<a href="data_processing.html#about" class="main-stroked-button">Learn More</a>
<a href="data_processing.html#about" class="main-filled-button">Analyze here</a>
</div>
</div>
</div>
<!-- // Item -->
</div>
</div>
<div class="scroll-down scroll-to-section"><a href="#about"><i class="fa fa-arrow-down"></i></a></div>
<!-- ***** Main Banner Area End ***** -->
<!-- ***** About Area Starts ***** -->
<section class="section" id="about">
<div class="container">
<div class="row">
<div class="col-lg-6 col-md-6 col-xs-12">
<div class="left-text-content">
<div class="section-heading">
<h6>About Us</h6>
<h2>We are neuroscientists <br/> just like you</h2>
</div>
<div class="row">
<div class="col-md-6 col-sm-6">
<div class="service-item">
<img src="assets/images/mind-map.png" alt="">
<h4>Brain science</h4>
</div>
</div>
<div class="col-md-6 col-sm-6">
<div class="service-item">
<img src="assets/images/lock-open.png" alt="">
<h4>Open Science</h4>
</div>
</div>
<div class="col-md-6 col-sm-6">
<div class="service-item">
<img src="assets/images/data-science.png" alt="">
<h4>Reproducibility</h4>
</div>
</div>
<div class="col-md-6 col-sm-6">
<div class="service-item">
<img src="assets/images/contact-info-03.png" alt="">
<h4>Web-centric</h4>
</div>
</div>
</div>
</div>
</div>
<div class="col-lg-6 col-md-6 col-xs-12">
<div class="right-text-content">
<p>Research findings can be difficult to replicate, partly because of inconsistencies in data acquisition,
preprocessing, and analysis. Our research seeks to understand the source of these discrepancies for PET
imaging, focusing primarily on standardization: how are neuroimaging data acquired, documented, analysed,
and archived. Such work helps establish data sharing pipelines, which in turn enables replication and
increases sample sizes.</br></br>
The primary objective of OpenNeuro PET is data sharing, either Openly with <a href="https://openneuro.org/search/modality/pet/" target="_blank"> OpenNeuro</a> (CC0 licence) or Pulicly with <a href="https://public-neuro.github.io/" target="_blank"> Public-nEUro</a> (Data access control and Data User Agreement to comply with EU-GDPR). Beside working on those data repositories, we also developped the <a href="https://github.com/openneuropet/PET2BIDS" target="_blank"> PET2BIDS</a> converter to help researchers curate their data and make them BIDS compliant. Our secondary objective is to develop tools for automated QC and template building.</br></br>
OpenNeuroPET is a collaboration between the Neurobiology Research Unit (NRU) at
Copenhagen University Hospital, NIMH, MGH and Stanford University.</p><br>
<p>It is funded through the BRAIN Initiative grant # 1R24MH120004-01A1 and the Novo Nordisk Foundation grant # NN20OC0063277.</p>
<li></br>
<img src="assets/images/NIH-Logo.jpg" alt="NIH">
<img src="assets/images/novo-nordisk-logo.jpg" alt="nono-nordisk">
</li>
</div>
</div>
</div>
</div>
</section>
<!-- ***** About Area Ends ***** -->
<!-- ***** Features Big Item Start ***** -->
<section class="section" id="features">
<div class="container">
<div class="row">
<div class="col-lg-4 col-md-8 col-sm-12 col-xs-12" data-scroll-reveal="enter left move 30px over 0.6s after 0.4s">
<div class="features-item">
<div class="features-icon">
<img src="assets/images/features-icon-1.png" alt="">
</div>
<div class="features-content">
<h4>Use and Share Data</h4>
<p>All PET data are findable and accessible via the <a href="https://https://openneuro.org/search/modality/pet/" target="_blank"> OpenNeuro portal</a></p>
<p>Interested in sharing under GDPR? check out our <a href="https://public-neuro.github.io/" target="_blank"> Public-nEUro repositorie</a></p>
</div>
</div>
</div>
<div class="col-lg-4 col-md-8 col-sm-12 col-xs-12" data-scroll-reveal="enter bottom move 30px over 0.6s after 0.4s">
<div class="features-item">
<div class="features-icon">
<img src="assets/images/features-icon-1.png" alt="">
</div>
<div class="features-content">
<h4>Curate your own data</h4>
<p>Use our <a href="https://github.com/openneuropet/PET2BIDS" target="_blank">
BIDS converter</a> to prepare your data. The <a href = "https://bids-standard.github.io/bids-validator/"
target="_blank"> BIDS validator </a> will highlight remaining issues.</p>
</div>
</div>
</div>
<div class="col-lg-4 col-md-8 col-sm-12 col-xs-12" data-scroll-reveal="enter bottom move 30px over 0.6s after 0.4s">
<div class="features-item">
<div class="features-icon">
<img src="assets/images/features-icon-1.png" alt="">
</div>
<div class="features-content">
<h4><a href="data_processing.html">Execute pipelines</a></h4>
<p>Shared data can be analyzed on our computational platform using predefined pipelines
or uploading your own container [work in progress].</p>
</div>
</div>
</div>
<div class="col-lg-4 col-md-8 col-sm-12 col-xs-12" data-scroll-reveal="enter right move 30px over 0.6s after 0.4s">
<div class="features-item">
<div class="features-icon">
<img src="assets/images/features-icon-1.png" alt="">
</div>
<div class="features-content">
<h4>Learn about PET-BIDS, automated analyses, and join our events</h4>
<p>We particpate and organize many scientific events. All of your activities are open,
check out the <a href="https://github.com/openneuropet/outreach"> outreach repository here </a>
or access our <a href="outreach_activities.html"> outreach page </a>.</p>
</div>
</div>
</div>
</div>
</div>
</section>
<!-- ***** Features Big Item End ***** -->
<!-- ***** Newsletters Start***** -->
<section class="section" id="subscribe">
<div class="container">
<div class="row">
<div class="col-lg-8 offset-lg-2">
<div class="section-heading">
<h6>Subscribe to the Newsletter</h6>
<h2>Keep informed of main events!</h2>
</div>
<div class="subscribe-content">
<p>It won't be the annoying weekly/monthy emails that clutter your email box.
When important things happen (e.g. major update, new tool, workshop) we'll let you know.</p>
<br\>
<p style="font-style: italic;">By subscribing you consent for Open NeuroPET to keep your email address for the purpose of news communication.
Only your email is recorded and kept for as long as the project is running. It will not be shared by other parties, there is no other data
processor than the Open NeuroPET team. You can withdraw at any time by sending us an email.</p>
<div class="subscribe-form">
<form id="subscribe-now" name="subscribe" action="https://formspree.io/f/xeqvodwe" method="post">
<div class="row">
<div class="col-md-8 col-sm-12">
<fieldset>
<input name="email" type="text" id="email" placeholder="Enter your email..." required="">
</fieldset>
</div>
<div class="col-md-4 col-sm-12">
<fieldset>
<button type="submit" name='submit' value="submit" id="form-submit" class="main-button">Subscribe Now</button>
</fieldset>
</div>
</div>
</form>
</div>
</div>
</div>
</div>
</div>
</section>
<!-- ***** Newsletters Ends ***** -->
<!-- ***** Projects Area Starts ***** -->
<section class="section" id="projects">
<div class="container">
<div class="row">
<div class="col-lg-3">
<div class="section-heading">
<h6>Our Projects</h6>
</div>
<div class="filters">
<ul>
<li class="active" data-filter="*">All</li>
<li data-filter=".host">Data Hosting</li>
<li data-filter=".cur">Data Curation</li>
<li data-filter=".ana">Data Analysis</li>
<li data-filter=".tpl">PET Templates</li>
</ul>
</div>
</div>
<div class="col-lg-9">
<div class="filters-content">
<div class="row grid">
<div class="col-lg-4 col-md-4 col-sm-6 col-xs-12 all host">
<div class="item">
<a href="https://https://openneuro.org/search/modality/pet/" target="_blank">
<img src="assets/images/project-Pet-portal.jpg" alt="OpenNeuro PET portal figure"></a>
</div>
</div>
<div class="col-lg-4 col-md-4 col-sm-6 col-xs-12 all host">
<div class="item">
<a href="https://public-neuro.github.io/" target="_blank">
<img src="assets/images/PublicnEUro2.jpg" alt="Public-nEUro figure"></a>
</div>
</div>
<div class="col-lg-4 col-md-4 col-sm-6 col-xs-12 all cur">
<div class="item">
<a href="https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/09-positron-emission-tomography.html" target="_blank">
<img src="assets/images/project-BIDS_logo.jpg" alt="BIDS BIDS_logo"></a>
</div>
</div>
<div class="col-lg-4 col-md-4 col-sm-6 col-xs-12 all tpl">
<div class="item">
<a href="assets/images/project-serotonin-large.jpg" target="_blank">
<img src="assets/images/project-serotonin.jpg" alt="serotonine atlas figure"></a>
</div>
</div>
<div class="col-lg-4 col-md-4 col-sm-6 col-xs-12 all tpl">
<div class="item">
<a href="https://github.com/openneuropet/templates" target="_blank">
<img src="assets/images/project-bzr.jpg" alt="GABA atlas figure"></a>
</div>
</div>
<div class="col-lg-4 col-md-4 col-sm-6 col-xs-12 all ana">
<div class="item">
<a href="https://journals.sagepub.com/doi/10.1177/0271678X20905433" target="_blank">
<img src="assets/images/project-archival.jpg" alt="archival figure"></a>
</div>
</div>
<div class="col-lg-4 col-md-4 col-sm-6 col-xs-12 all ana">
<div class="item">
<a href="https://github.com/openneuropet/PET_pipelines" target="_blank">
<img src="assets/images/project-analysis.jpg" alt="pipeline figure"></a>
</div>
</div>
</div>
</div>
</div>
</div>
</section>
<!-- ***** Projects Area Ends ***** -->
<!-- ***** meet the Team Starts***** -->
<section class="section" id="testimonials">
<div class="container">
<div class="row">
<div class="col-lg-12">
<div class="section-heading">
<h6>Meet the Team</h6>
</div>
</div>
<div class="col-lg-12 col-md-12 col-sm-12 mobile-bottom-fix-big" data-scroll-reveal="enter left move 30px over 0.6s after 0.4s">
<div class="owl-carousel owl-theme">
<div class="item author-item">
<div class="member-thumb">
<img src="assets/images/M1_Gitte.jpg" alt="Gitte Moos Knudsen">
<div class="hover-effect">
<div class="hover-content">
<ul>
<li><a href="https://nru.dk/index.php/staff-list/faculty/19-gitte-moos-knudsen/" target"_blank"><i class="fa fa-chain"></i></a></li>
<li><a href="https://twitter.com/@GitteKnudsen2"><i class="fa fa-twitter"></i></a></li>
</ul>
</div>
</div>
</div>
<h4>Gitte Moos Knudsen</h4>
<span>Chair, Professor - NRU, UCPH</span>
</div>
<div class="item author-item">
<div class="member-thumb">
<img src="assets/images/M2_Bob.jpg" alt="bob Innis">
<div class="hover-effect">
<div class="hover-content">
<ul>
<li><a href="https://www.nimh.nih.gov/research/research-conducted-at-nimh/principal-investigators/robert-innis.shtml"
target="_blank"><i class="fa fa-chain"></i></a></li>
</ul>
</div>
</div>
</div>
<h4>Robert Innis</h4>
<span>Chief Section on PET Neuroimaging Sciences &
Molecular Imaging Branch - NIH</span>
</div>
<div class="item author-item">
<div class="member-thumb">
<img src="assets/images/M3_Melanie.jpg" alt="Melanie Ganz-Benjaminsen">
<div class="hover-effect">
<div class="hover-content">
<ul>
<li><a href="https://nru.dk/index.php/staff-list/post-docs/62-melanie-ganz-benjaminsen/" target"_blank"><i class="fa fa-chain"></i></a></li>
<li><a href="https://twitter.com/melanieganzben1"><i class="fa fa-twitter"></i></a></li>
</ul>
</div>
</div>
</div>
<h4>Melanie Ganz-Benjaminsen</h4>
<span>Assistant professor - NRU, UCPH</span>
</div>
<div class="item author-item">
<div class="member-thumb">
<img src="assets/images/M4_Adam.jpg" alt="Adam Thomas">
<div class="hover-effect">
<div class="hover-content">
<ul>
<li><a href="https://www.nimh.nih.gov/research/research-conducted-at-nimh/principal-investigators/adam-g-thomas-phd.shtml" target"_blank"><i class="fa fa-chain"></i></a></li>
<li><a href="https://twitter.com/damadam"><i class="fa fa-twitter"></i></a></li>
</ul>
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