From ea4fdf3e5881135f2508e869527b7037a42bea1c Mon Sep 17 00:00:00 2001
From: imedina <igmecas@gmail.com>
Date: Mon, 18 Mar 2019 03:59:58 +0000
Subject: [PATCH] New stable release v1.4.0

---
 opencga-analysis/pom.xml                               |  2 +-
 opencga-app/pom.xml                                    |  2 +-
 opencga-catalog/pom.xml                                |  2 +-
 opencga-client/pom.xml                                 |  2 +-
 opencga-core/pom.xml                                   |  2 +-
 opencga-server/pom.xml                                 |  2 +-
 opencga-storage/opencga-storage-app/pom.xml            |  2 +-
 opencga-storage/opencga-storage-benchmark/pom.xml      |  2 +-
 opencga-storage/opencga-storage-core/pom.xml           |  2 +-
 .../opencga-storage-hadoop-core/pom.xml                |  2 +-
 .../hadoop/variant/io/VariantExporterDriver.java       |  2 +-
 .../opencga-storage-hadoop-deps/pom.xml                |  4 ++--
 opencga-storage/opencga-storage-hadoop/pom.xml         |  4 ++--
 opencga-storage/opencga-storage-mongodb/pom.xml        |  2 +-
 opencga-storage/opencga-storage-server/pom.xml         |  2 +-
 opencga-storage/pom.xml                                |  4 ++--
 .../OpenCga/TestsSuits/MetaTests/MetaTests/content.txt |  2 +-
 .../OpenCga/TestsSuits/SuiteSetUp/content.txt          |  2 +-
 opencga-test/pom.xml                                   |  2 +-
 opencga-web/lib/jsorolla                               |  2 +-
 pom.xml                                                | 10 +++++-----
 21 files changed, 28 insertions(+), 28 deletions(-)

diff --git a/opencga-analysis/pom.xml b/opencga-analysis/pom.xml
index 7c15c591e26..561d8bee83c 100644
--- a/opencga-analysis/pom.xml
+++ b/opencga-analysis/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>..</relativePath>
     </parent>
 
diff --git a/opencga-app/pom.xml b/opencga-app/pom.xml
index 36103890768..8bf89e29aed 100644
--- a/opencga-app/pom.xml
+++ b/opencga-app/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-catalog/pom.xml b/opencga-catalog/pom.xml
index b35831e37e5..22108b942c5 100644
--- a/opencga-catalog/pom.xml
+++ b/opencga-catalog/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-client/pom.xml b/opencga-client/pom.xml
index 81bdf25b453..e74126909e7 100644
--- a/opencga-client/pom.xml
+++ b/opencga-client/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-core/pom.xml b/opencga-core/pom.xml
index 5795a6f5d0e..51c2238c612 100644
--- a/opencga-core/pom.xml
+++ b/opencga-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-server/pom.xml b/opencga-server/pom.xml
index b4ebfe92904..a31c971280c 100644
--- a/opencga-server/pom.xml
+++ b/opencga-server/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-app/pom.xml b/opencga-storage/opencga-storage-app/pom.xml
index d0edbc07f49..9a6edd5e3a7 100644
--- a/opencga-storage/opencga-storage-app/pom.xml
+++ b/opencga-storage/opencga-storage-app/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-benchmark/pom.xml b/opencga-storage/opencga-storage-benchmark/pom.xml
index 9c750c1c809..ba0dfc51310 100644
--- a/opencga-storage/opencga-storage-benchmark/pom.xml
+++ b/opencga-storage/opencga-storage-benchmark/pom.xml
@@ -21,7 +21,7 @@
     <parent>
         <artifactId>opencga-storage</artifactId>
         <groupId>org.opencb.opencga</groupId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 
diff --git a/opencga-storage/opencga-storage-core/pom.xml b/opencga-storage/opencga-storage-core/pom.xml
index 4f9954c36b4..21dbe45d32b 100644
--- a/opencga-storage/opencga-storage-core/pom.xml
+++ b/opencga-storage/opencga-storage-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml
index 60097e09312..4e0cf021821 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/main/java/org/opencb/opencga/storage/hadoop/variant/io/VariantExporterDriver.java b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/main/java/org/opencb/opencga/storage/hadoop/variant/io/VariantExporterDriver.java
index 3f673c047ba..99c01f0870f 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/main/java/org/opencb/opencga/storage/hadoop/variant/io/VariantExporterDriver.java
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/main/java/org/opencb/opencga/storage/hadoop/variant/io/VariantExporterDriver.java
@@ -49,7 +49,7 @@
  * hbase_conf=$(hbase classpath | tr ":" "\n" | grep "/conf" | tr "\n" ":")
  * export HADOOP_CLASSPATH=${hbase_conf}:$PWD/libs/avro-1.7.7.jar:$PWD/libs/jackson-databind-2.6.6.jar:$PWD/libs/jackson-core-2.6.6.jar
  * export HADOOP_CLASSPATH=${HADOOP_CLASSPATH}:$PWD/libs/jackson-annotations-2.6.6.jar
- * yarn jar opencga-storage-hadoop-core-1.4.0-rc3-dev-jar-with-dependencies.jar \
+ * yarn jar opencga-storage-hadoop-core-1.4.0-jar-with-dependencies.jar \
  *      org.opencb.opencga.storage.hadoop.variant.io.VariantExporterDriver \
  *      opencga_variants study myStudy --of avro --output my.variants.avro --region 22
  *
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-deps/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-deps/pom.xml
index 89e534597ef..05f278780e0 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-deps/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-deps/pom.xml
@@ -50,13 +50,13 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <!--<relativePath>../pom.xml</relativePath>-->
     </parent>
 
     <!--<groupId>org.opencb.opencga</groupId>-->
     <artifactId>opencga-storage-hadoop-deps</artifactId>
-    <version>1.4.0-rc3-dev</version>
+    <version>1.4.0</version>
 
     <properties>
         <checkstyle.skip>true</checkstyle.skip>
diff --git a/opencga-storage/opencga-storage-hadoop/pom.xml b/opencga-storage/opencga-storage-hadoop/pom.xml
index 404fa64be6a..68cb13a0e67 100644
--- a/opencga-storage/opencga-storage-hadoop/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/pom.xml
@@ -73,12 +73,12 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
     <artifactId>opencga-storage-hadoop</artifactId>
-    <version>1.4.0-rc3-dev</version>
+    <version>1.4.0</version>
     <packaging>pom</packaging>
 
     <modules>
diff --git a/opencga-storage/opencga-storage-mongodb/pom.xml b/opencga-storage/opencga-storage-mongodb/pom.xml
index f5a7fd7e455..8c1334a4f7e 100644
--- a/opencga-storage/opencga-storage-mongodb/pom.xml
+++ b/opencga-storage/opencga-storage-mongodb/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-server/pom.xml b/opencga-storage/opencga-storage-server/pom.xml
index 0a4ee85e602..4ca483339f7 100644
--- a/opencga-storage/opencga-storage-server/pom.xml
+++ b/opencga-storage/opencga-storage-server/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/pom.xml b/opencga-storage/pom.xml
index a105a54c934..5f818b315de 100644
--- a/opencga-storage/pom.xml
+++ b/opencga-storage/pom.xml
@@ -22,13 +22,13 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
     <!-- Version must be set to a literal, variables cannot be used in nested modules -->
     <artifactId>opencga-storage</artifactId>
-    <version>1.4.0-rc3-dev</version>
+    <version>1.4.0</version>
     <packaging>pom</packaging>
 
     <properties>
diff --git a/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/MetaTests/MetaTests/content.txt b/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/MetaTests/MetaTests/content.txt
index 34140b116a0..15f69374ed7 100644
--- a/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/MetaTests/MetaTests/content.txt
+++ b/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/MetaTests/MetaTests/content.txt
@@ -4,7 +4,7 @@
 
 !|Table: Rest Fixture | $baseURL |
 | GET | /v1/meta/about |200|  Content-Type: application/json ||
-|let||js|response.jsonbody.response[0].result[0].Version|1.4.0-rc3-dev|
+|let||js|response.jsonbody.response[0].result[0].Version|1.4.0|
 
 !3 OpenCGA Status
 !|Table: Rest Fixture | $baseURL |
diff --git a/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/SuiteSetUp/content.txt b/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/SuiteSetUp/content.txt
index 2efbac559f3..a9363cac505 100644
--- a/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/SuiteSetUp/content.txt
+++ b/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/SuiteSetUp/content.txt
@@ -1,6 +1,6 @@
 !define TEST_SYSTEM {slim}
 !path target/appassembler/dependencies/*.jar
-!define OPENCGA_VERSION {opencga-1.4.0-rc3-dev}
+!define OPENCGA_VERSION {opencga-1.4.0}
 !define TEST_HOST {qa.opencb.org}
 !define VERSION {v1}
 
diff --git a/opencga-test/pom.xml b/opencga-test/pom.xml
index e284a52ebe3..ac9b3951aed 100644
--- a/opencga-test/pom.xml
+++ b/opencga-test/pom.xml
@@ -24,7 +24,7 @@
 
     <groupId>org.opencb.opencga</groupId>
     <artifactId>opencga-test</artifactId>
-    <version>1.4.0-rc3-dev</version>
+    <version>1.4.0</version>
     <packaging>pom</packaging>
 
     <dependencies>
diff --git a/opencga-web/lib/jsorolla b/opencga-web/lib/jsorolla
index d3a72af6617..b4952554626 160000
--- a/opencga-web/lib/jsorolla
+++ b/opencga-web/lib/jsorolla
@@ -1 +1 @@
-Subproject commit d3a72af6617fa77585996b4a0e964de15b4108a0
+Subproject commit b495255462654a16794c948204a7c29719408936
diff --git a/pom.xml b/pom.xml
index 6786587e3f4..37f626db13a 100644
--- a/pom.xml
+++ b/pom.xml
@@ -22,7 +22,7 @@
 
     <groupId>org.opencb.opencga</groupId>
     <artifactId>opencga</artifactId>
-    <version>1.4.0-rc3-dev</version>
+    <version>1.4.0</version>
     <packaging>pom</packaging>
     <name>OpenCGA</name>
     
@@ -37,11 +37,11 @@
     </modules>
 
     <properties>
-        <opencga.version>1.4.0-rc3-dev</opencga.version>
+        <opencga.version>1.4.0</opencga.version>
         <java.version>1.8</java.version>
-        <java-common-libs.version>3.7.3-SNAPSHOT</java-common-libs.version>
-        <biodata.version>1.4.3-SNAPSHOT</biodata.version>
-        <cellbase.version>4.6.2-SNAPSHOT</cellbase.version>
+        <java-common-libs.version>3.7.3</java-common-libs.version>
+        <biodata.version>1.4.3</biodata.version>
+        <cellbase.version>4.6.2</cellbase.version>
         <hpg-bigdata.version>1.0.0-beta4</hpg-bigdata.version>
         <bionet.version>0.2.0-SNAPSHOT</bionet.version>
         <jackson.version>2.9.7</jackson.version>