diff --git a/cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalVariantBuilder.java b/cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalVariantBuilder.java index 7529bbdd2..41b701fdb 100644 --- a/cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalVariantBuilder.java +++ b/cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalVariantBuilder.java @@ -101,7 +101,7 @@ public void parse() throws IOException, RocksDBException, CellBaseException { // GWAS catalog Path gwasFile = clinicalVariantFolder.resolve(Paths.get(configuration.getDownload().getGwasCatalog().getHost()).getFileName()); if (gwasFile != null && Files.exists(gwasFile)) { - Path dbsnpFile = clinicalVariantFolder.resolve(configuration.getDownload().getHgmd().getFiles().get(0)); + Path dbsnpFile = clinicalVariantFolder.resolve(configuration.getDownload().getGwasCatalog().getFiles().get(0)); if (dbsnpFile != null && Files.exists(dbsnpFile)) { Path tabixFile = Paths.get(dbsnpFile.toAbsolutePath() + ".tbi"); if (tabixFile != null && Files.exists(tabixFile)) { @@ -125,7 +125,6 @@ public void parse() throws IOException, RocksDBException, CellBaseException { serializer.close(); throw e; } - } private Path getPathFromHost(String host) throws CellBaseException {