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Commits on Nov 16, 2021

• lib: improve JSON parser by taking into account ignored and unknow properties

  jtarraga

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Commits on May 11, 2021

• lib: check aggregated header to get INFO and FORMAT attributes

  jtarraga

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Commits on Mar 23, 2021

• lib: remove stdout message

  jtarraga

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• lib: improve building RNA nodes (mainly their relationships to MIRNA and TRANSCRIPT nodes) by taking into account reactome's xref

  jtarraga

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Commits on Mar 22, 2021

• lib: improve building GENE nodes (mainly their relationships to DNA nodes) by taking into account reactome's xref

  jtarraga

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Commits on Mar 17, 2021

• lib: improve protein build (mainly protein relationships) by taking into account reactome's xref

  jtarraga

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Commits on Mar 9, 2021

• lib: since variant IDs are long (for INSERTION and DELETION), they are compressed using sha256

  jtarraga

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Commits on Mar 3, 2021

• lib: fix REFSEQ_EXON label

  jtarraga

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• lib: fix gene to panel-gene relations taking into account Ensembl and RefSeq genes

  jtarraga

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Commits on Mar 2, 2021

• lib: fix dna-gene relations taking into account Ensembl and RefSeq genes

  jtarraga

  committed
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Commits on Mar 1, 2021

• lib: remove duplicated DNA nodes

  jtarraga

  committed
  4e7353e

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• lib: since Neo4J can not index long IDs, the allele sequence is removed for the DELETION and INSERTION variant IDs

  jtarraga

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Commits on Feb 19, 2021

• lib: compress CSV files, #70

  jtarraga

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Commits on Feb 16, 2021

• server: update node webservices

  jtarraga

  committed
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• lib: create index on the CUSTOM node (attribute attr_type), #62

  jtarraga

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Commits on Feb 15, 2021

• lib: minor changes, #62

  jtarraga

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• lib: rename type to labels in nodes, #62

  jtarraga

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Commits on Feb 9, 2021

• core: add relation COMPONENT_OF_PHYSICAL_ENTITY_COMPLEX

  jtarraga

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Commits on Feb 8, 2021

• lib: delete files not used and clean code, #68

  jtarraga

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Commits on Feb 5, 2021

• Fix checkstyle

  jtarraga

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  4feb3cc

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• lib: create indexes on uid, id and name for all nodes

  jtarraga

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Commits on Feb 3, 2021

• lib: check if database is ready for indexing, and catch Neo4J exceptions

  jtarraga

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• lib: initialize the internal config node with the uid counter after building

  jtarraga

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Commits on Feb 2, 2021

• lib: remove duplicated relations

  jtarraga

  committed
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• lib: rename relations and nodes related to sample, #67

  jtarraga

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Commits on Jan 27, 2021

• lib: rename relations and nodes related to variant, #66

  jtarraga

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Commits on Jan 22, 2021

• lib: rename relations and nodes related to transcript, #65

  jtarraga

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• Resolve conflicts

  jtarraga

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• lib: rename relations and nodes related to protein, #64

  jtarraga

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• lib: uncommented builder code

  jtarraga

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• lib: rename relations and nodes related to genes and improve disease panel support, #63

  jtarraga

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Commits on Jan 19, 2021

• lib: fix PROTEIN_FEATURE node attributes

  jtarraga

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Commits on Jan 15, 2021

• server: implement web services to load nodes/relations, #61

  jtarraga

  committed
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• lib: implement API to load nodes/relations in an existing BioNetDB database, it includes add, update and delete both nodes and relations, #61

  jtarraga

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• Update pom.xml

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