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docProtocolV2.0.owl
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<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY terms "http://purl.org/dc/terms/" >
<!ENTITY vann "http://purl.org/vocab/vann/" >
<!ENTITY SO "http://purl.org/obo/owl/SO#" >
<!ENTITY bfo "http://www.ifomis.org/bfo/1.1#" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY obo "http://purl.obolibrary.org/obo/" >
<!ENTITY swrl "http://www.w3.org/2003/11/swrl#" >
<!ENTITY swrlb "http://www.w3.org/2003/11/swrlb#" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY sp "http://purl.org/net/SMARTprotocol#" >
<!ENTITY owl2xml "http://www.w3.org/2006/12/owl2-xml#" >
<!ENTITY snap "http://www.ifomis.org/bfo/1.1/snap#" >
<!ENTITY span "http://www.ifomis.org/bfo/1.1/span#" >
<!ENTITY ro "http://www.obofoundry.org/ro/ro.owl#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY iao "http://purl.obolibrary.org/obo/iao.owl#" >
<!ENTITY MSH "http://purl.bioontology.org/ontology/MSH/" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
<!ENTITY protege "http://protege.stanford.edu/plugins/owl/protege#" >
<!ENTITY xsp "http://www.owl-ontologies.com/2005/08/07/xsp.owl#" >
<!ENTITY Thesaurus "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#" >
<!ENTITY Ontology1184060740 "http://www.owl-ontologies.com/Ontology1184060740.owl#" >
<!ENTITY MGEDOntology "http://mged.sourceforge.net/ontologies/MGEDOntology.owl#" >
<!ENTITY miProtocol "http://www.semanticweb.org/ontologies/2013/3/miProtocol.owl#" >
<!ENTITY p1 "http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl#" >
<!ENTITY p2 "http://www.semanticweb.org/ontologies/2013/3/Ontology1365706525737.owl#" >
]>
<rdf:RDF xmlns="http://purl.org/net/SMARTprotocol#"
xml:base="http://purl.org/net/SMARTprotocol"
xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
xmlns:p2="http://www.semanticweb.org/ontologies/2013/3/Ontology1365706525737.owl#"
xmlns:iao="&obo;iao.owl#"
xmlns:p1="&obo;iao/dev/ontology-metadata.owl#"
xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:vann="http://purl.org/vocab/vann/"
xmlns:bfo="http://www.ifomis.org/bfo/1.1#"
xmlns:Thesaurus="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:MSH="http://purl.bioontology.org/ontology/MSH/"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
xmlns:owl2xml="http://www.w3.org/2006/12/owl2-xml#"
xmlns:miProtocol="http://www.semanticweb.org/ontologies/2013/3/miProtocol.owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:sp="http://purl.org/net/SMARTprotocol#"
xmlns:xsp="http://www.owl-ontologies.com/2005/08/07/xsp.owl#"
xmlns:Ontology1184060740="http://www.owl-ontologies.com/Ontology1184060740.owl#"
xmlns:SO="http://purl.org/obo/owl/SO#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:MGEDOntology="http://mged.sourceforge.net/ontologies/MGEDOntology.owl#"
xmlns:span="http://www.ifomis.org/bfo/1.1/span#">
<owl:Ontology rdf:about="http://purl.org/net/SMARTprotocol#">
<rdfs:label xml:lang="en">SMART Protocols Ontology: Document Module</rdfs:label>
<terms:created rdf:datatype="&xsd;date">2013-07-01</terms:created>
<terms:contributor rdf:datatype="&xsd;anyURI">http://delicias.dia.fi.upm.es/members/DGarijo/#me</terms:contributor>
<terms:creator rdf:datatype="&xsd;anyURI">http://oxgiraldo.wordpress.com/</terms:creator>
<terms:contributor rdf:datatype="&xsd;anyURI">http://www.alexandergarcia.name/</terms:contributor>
<terms:contributor rdf:datatype="&xsd;anyURI">http://www.dia.fi.upm.es/index.php?page=oscar-corcho/</terms:contributor>
<terms:license>http://creativecommons.org/licenses/by-nc-sa/2.0/</terms:license>
<terms:title xml:lang="en">SMART Protocols Ontology: Document Module</terms:title>
<rdfs:comment xml:lang="en">SMART Protocols Ontology: Document Module is an ontology designed to represent metadata used to report a laboratory protocol.</rdfs:comment>
<terms:description xml:lang="en">SMART Protocols Ontology: Document Module is an ontology designed to represent metadata used to report a laboratory protocol.</terms:description>
<vann:preferredNamespacePrefix>sp</vann:preferredNamespacePrefix>
<owl:versionInfo xml:lang="en">2.0</owl:versionInfo>
<vann:preferredNamespaceUri>http://purl.org/net/SMARTprotocol#</vann:preferredNamespaceUri>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000112">
<rdfs:label rdf:datatype="&xsd;string">example of usage</rdfs:label>
<obo:IAO_0000115 rdf:datatype="&xsd;string">A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not</obo:IAO_0000115>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000115">
<rdfs:label rdf:datatype="&xsd;string">definition</rdfs:label>
<obo:IAO_0000115 rdf:datatype="&xsd;string">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000118">
<rdfs:label rdf:datatype="&xsd;string">alternative term</rdfs:label>
<obo:IAO_0000115 rdf:datatype="&xsd;string">An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)</obo:IAO_0000115>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000119">
<rdfs:label rdf:datatype="&xsd;string">definition source</rdfs:label>
<obo:IAO_0000115 rdf:datatype="&xsd;string">formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000412">
<rdfs:label rdf:datatype="&xsd;string">imported from</rdfs:label>
<obo:IAO_0000115 rdf:datatype="&xsd;string">For external terms/classes, the ontology from which the term was imported</obo:IAO_0000115>
</owl:AnnotationProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/OBI_0000304 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000304">
<rdfs:label>is manufactured by</rdfs:label>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000118 rdf:datatype="&xsd;string">has_manufacturer</obo:IAO_0000118>
<obo:IAO_0000115 xml:lang="en">c is_manufactured_by o means that there was a process p in which c was built in which a person, or set of people or machines did the work(bore the &quot;Manufacturer Role&quot;, and those people/and or machines were members or of directed by the organization to do this.</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">http://www.affymetrix.com/products/arrays/specific/hgu133.affx is_manufactered_by http://www.affymetrix.com/ (if we decide to use these URIs for the actual entities)</obo:IAO_0000112>
<rdfs:range rdf:resource="&sp;Manufacturer"/>
<rdfs:domain rdf:resource="&snap;MaterialEntity"/>
</owl:ObjectProperty>
<!-- http://purl.org/net/SMARTprotocol#hasAlertMessage -->
<owl:ObjectProperty rdf:about="&sp;hasAlertMessage">
<rdfs:label xml:lang="en">has alert message</rdfs:label>
<obo:IAO_0000112 rdf:datatype="&xsd;string">"DNA Extraction Protocol" hasAlertMessage "Critical Step"</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="&xsd;string">hasAlertMessage is a relation that binds a chemical substance or protocol to an alert message such as caution, critical step, timing, etc.</obo:IAO_0000115>
<rdfs:range rdf:resource="&Ontology1184060740;Class_121"/>
</owl:ObjectProperty>
<!-- http://purl.org/net/SMARTprotocol#hasAuthor -->
<owl:ObjectProperty rdf:about="&sp;hasAuthor">
<rdfs:label xml:lang="en">has author</rdfs:label>
<obo:IAO_0000112 rdf:datatype="&xsd;string">"Laboratory protocol" hasAuthor "John Smith"</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="&xsd;string">hasAuthor is a relation that binds a document such as laboratory protocol to an author of protocol.</obo:IAO_0000115>
</owl:ObjectProperty>
<!-- http://purl.org/net/SMARTprotocol#hasCatalogNumber -->
<owl:ObjectProperty rdf:about="&sp;hasCatalogNumber">
<rdfs:label xml:lang="en">has catalog number</rdfs:label>
<obo:IAO_0000112 rdf:datatype="&xsd;string">"Nalgene Cryogenic Tube" hasCatalogNumber "5000-0012"</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="&xsd;string">hasCatalogNumber binds a thing to a numeral or string of numerals that is used for identification.</obo:IAO_0000115>
<rdfs:range rdf:resource="&sp;CatalogNumber"/>
<rdfs:domain rdf:resource="&snap;MaterialEntity"/>
</owl:ObjectProperty>
<!-- http://purl.org/net/SMARTprotocol#hasName -->
<owl:ObjectProperty rdf:about="&sp;hasName">
<rdfs:label xml:lang="en">has name</rdfs:label>
<obo:IAO_0000112 rdf:datatype="&xsd;string">"Buffer" hasName "1X Queen’s lysis buffer (1L)"</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="&xsd;string">hasName binds to a person, animal, place or thing to a word or set of words by which someone or something is known, addressed, or referred to.</obo:IAO_0000115>
<rdfs:range rdf:resource="&Thesaurus;C42614"/>
<rdfs:domain rdf:resource="&snap;MaterialEntity"/>
</owl:ObjectProperty>
<!-- http://purl.org/net/SMARTprotocol#hasSequence -->
<owl:ObjectProperty rdf:about="&sp;hasSequence">
<rdfs:label xml:lang="en">has sequence</rdfs:label>
<obo:IAO_0000112 rdf:datatype="&xsd;string">The primer CII-fw hasSequence 5′-GAATGATGTACCACCTTTG-3′</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="&xsd;string">hasSequence binds a oligonucleotide or nucleic acid to a sequence.</obo:IAO_0000115>
<rdfs:domain rdf:resource="&sp;Primer"/>
<rdfs:range rdf:resource="&sp;PrimerSequence"/>
</owl:ObjectProperty>
<!-- http://purl.org/net/SMARTprotocol#hasTitle -->
<owl:ObjectProperty rdf:about="&sp;hasTitle">
<rdfs:label xml:lang="en">has title</rdfs:label>
<obo:IAO_0000112 rdf:datatype="&xsd;string">"Laboratory protocol" hasTitle "An Optimized Chloroplast DNA Extraction Protocol for Grasses (Poaceae) Proves Suitable for Whole Plastid Genome Sequencing and SNP Detection"</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="&xsd;string">hasTitle is a relation that binds a document such as laboratory protocol to a title of protocol.</obo:IAO_0000115>
<rdfs:range rdf:resource="&sp;TitleOfProtocol"/>
</owl:ObjectProperty>
<!-- http://purl.org/net/SMARTprotocol#hasVersion -->
<owl:ObjectProperty rdf:about="&sp;hasVersion">
<rdfs:label xml:lang="en">has version</rdfs:label>
<obo:IAO_0000112 rdf:datatype="&xsd;string">"LightCycler 480 Software" hasVersion "Version 1.5"</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="&xsd;string">hasVersion binds a document, software, or other type of information content entity to a version (one of a sequence of copies of a program, document or software).</obo:IAO_0000115>
<rdfs:range rdf:resource="&Thesaurus;C25714"/>
<rdfs:domain rdf:resource="&obo;IAO_0000030"/>
</owl:ObjectProperty>
<!-- http://www.obofoundry.org/ro/ro.owl#has_part -->
<owl:ObjectProperty rdf:about="&ro;has_part">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">has part</rdfs:label>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<owl:inverseOf rdf:resource="&ro;part_of"/>
</owl:ObjectProperty>
<!-- http://www.obofoundry.org/ro/ro.owl#part_of -->
<owl:ObjectProperty rdf:about="&ro;part_of">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">part of</rdfs:label>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBO Relation Ontology</obo:IAO_0000412>
<obo:IAO_0000115 rdf:datatype="&xsd;string">Parthood as a relation between instances: The primitive instance-level relation p part_of p1 is illustrated in assertions such as: this instance of rhodopsin mediated phototransduction part_of this instance of visual perception. This relation satisfies at least the following standard axioms of mereology: reflexivity (for all p, p part_of p); anti-symmetry (for all p, p1, if p part_of p1 and p1 part_of p then p and p1 are identical); and transitivity (for all p, p1, p2, if p part_of p1 and p1 part_of p2, then p part_of p2). Analogous axioms hold also for parthood as a relation between spatial regions. For parthood as a relation between continuants, these axioms need to be modified to take account of the incorporation of a temporal argument. Thus for example the axiom of transitivity for continuants will assert that if c part_of c1 at t and c1 part_of c2 at t, then also c part_of c2 at t. Parthood as a relation between classes: To define part_of as a relation between classes we again need to distinguish the two cases of continuants and processes, even though the explicit reference to instants of time now falls away. For continuants, we have C part_of C1 if and only if any instance of C at any time is an instance-level part of some instance of C1 at that time, as for example in: cell nucleus part_ of cell.</obo:IAO_0000115>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://mged.sourceforge.net/ontologies/MGEDOntology.owl#Cultivar -->
<owl:Class rdf:about="&MGEDOntology;Cultivar">
<rdfs:label xml:lang="en">cultivar</rdfs:label>
<rdfs:subClassOf rdf:resource="&MGEDOntology;StrainOrLine"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">Microarray and Gene Expression Data Ontology (MGEDO)</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">a plant variety obtained in agriculture in horticulture.</obo:IAO_0000115>
</owl:Class>
<!-- http://mged.sourceforge.net/ontologies/MGEDOntology.owl#Ecotype -->
<owl:Class rdf:about="&MGEDOntology;Ecotype">
<rdfs:label xml:lang="en">ecotype</rdfs:label>
<rdfs:subClassOf rdf:resource="&MGEDOntology;StrainOrLine"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">Microarray and Gene Expression Data Ontology (MGEDO)</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">a biotype resulting from selection in a particular habitat, e.g. the A. thaliana Ecotype Ler</obo:IAO_0000115>
</owl:Class>
<!-- http://mged.sourceforge.net/ontologies/MGEDOntology.owl#StrainOrLine -->
<owl:Class rdf:about="&MGEDOntology;StrainOrLine">
<rdfs:label xml:lang="en">strain or line</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;OBI_0100026"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">Microarray and Gene Expression Data Ontology (MGEDO)</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">A strain or line is an animal or plant offspring that has a single ancestral breeding pair or parent as a result of brother x sister or parent x offspring matings. This class is extended to include F1 offspring and established breeding lines. For microbes, these are isolates derived from nature or in the laboratory.</obo:IAO_0000115>
</owl:Class>
<!-- http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12801 -->
<owl:Class rdf:about="&Thesaurus;C12801">
<rdfs:label xml:lang="en">tissue</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;OBI_0000671"/>
<obo:IAO_0000119 rdf:datatype="&xsd;string">CDISC</obo:IAO_0000119>
<obo:IAO_0000412 rdf:datatype="&xsd;string">NCI thesaurus</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">An anatomical structure consisting of similarly specialized cells and intercellular matrix, aggregated according to genetically determined spatial relationships, performing a specific function.</obo:IAO_0000115>
</owl:Class>
<!-- http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25714 -->
<owl:Class rdf:about="&Thesaurus;C25714">
<rdfs:label xml:lang="en">version</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000300"/>
<owl:disjointWith rdf:resource="&Thesaurus;C42614"/>
<owl:disjointWith rdf:resource="&sp;ApplicationOfTheProtocol"/>
<owl:disjointWith rdf:resource="&sp;CatalogNumber"/>
<owl:disjointWith rdf:resource="&sp;LimitationOfTheProtocol"/>
<owl:disjointWith rdf:resource="&sp;PrimerSequence"/>
<owl:disjointWith rdf:resource="&sp;ProvenanceOfTheProtocol"/>
<owl:disjointWith rdf:resource="&sp;PurposeOfProtocol"/>
<owl:disjointWith rdf:resource="&sp;TitleOfProtocol"/>
<owl:disjointWith rdf:resource="&Ontology1184060740;Class_121"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">NCI thesaurus</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">A form or variant of a type or original; one of a sequence of copies of a program, each incorporating new modifications.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">VERS
Versioned</obo:IAO_0000118>
</owl:Class>
<!-- http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C41185 -->
<owl:Class rdf:about="&Thesaurus;C41185">
<rdfs:label xml:lang="en">concentration</rdfs:label>
<rdfs:subClassOf rdf:resource="&snap;Quality"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">NCI thesaurus</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">The quantity of a substance per unit volume or weight; a measure of the amount of substance present in a unit amount of mixture, particularly, the amount of solute dissolved in a solvent. The amounts can be expressed as moles, masses, volumes, or parts.</obo:IAO_0000115>
</owl:Class>
<!-- http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C42614 -->
<owl:Class rdf:about="&Thesaurus;C42614">
<rdfs:label xml:lang="en">name</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000300"/>
<owl:disjointWith rdf:resource="&sp;ApplicationOfTheProtocol"/>
<owl:disjointWith rdf:resource="&sp;CatalogNumber"/>
<owl:disjointWith rdf:resource="&sp;LimitationOfTheProtocol"/>
<owl:disjointWith rdf:resource="&sp;PrimerSequence"/>
<owl:disjointWith rdf:resource="&sp;ProvenanceOfTheProtocol"/>
<owl:disjointWith rdf:resource="&sp;PurposeOfProtocol"/>
<owl:disjointWith rdf:resource="&sp;TitleOfProtocol"/>
<owl:disjointWith rdf:resource="&Ontology1184060740;Class_121"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">NCI thesaurus</obo:IAO_0000412>
<obo:IAO_0000115 rdf:datatype="&xsd;string">The words or language units by which a thing is known.</obo:IAO_0000115>
</owl:Class>
<!-- http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C70830 -->
<owl:Class rdf:about="&Thesaurus;C70830">
<rdfs:label xml:lang="en">solution</rdfs:label>
<rdfs:subClassOf rdf:resource="&snap;MaterialEntity"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasName"/>
<owl:allValuesFrom rdf:resource="&sp;SolutionName"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;has_part"/>
<owl:someValuesFrom rdf:resource="&Thesaurus;C85644"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasAlertMessage"/>
<owl:someValuesFrom rdf:resource="&Ontology1184060740;Class_122"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:someValuesFrom rdf:resource="&sp;SolutionList"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;has_part"/>
<owl:someValuesFrom rdf:resource="&sp;FinalConcentration"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasAlertMessage"/>
<owl:someValuesFrom rdf:resource="&sp;StorageCondition"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasAlertMessage"/>
<owl:someValuesFrom rdf:resource="&sp;Hint"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="&MSH;D004864"/>
<owl:disjointWith rdf:resource="&obo;OBI_0000747"/>
<owl:disjointWith rdf:resource="&obo;OBI_0100026"/>
<owl:disjointWith rdf:resource="&sp;Manufacturer"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">NCI thesaurus</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">A homogeneous mixture of two or more substances; frequently (but not necessarily) a liquid solution.</obo:IAO_0000115>
</owl:Class>
<!-- http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C84327 -->
<owl:Class rdf:about="&Thesaurus;C84327">
<rdfs:label xml:lang="en">freezer</rdfs:label>
<rdfs:subClassOf rdf:resource="&MSH;D004864"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">NCI thesaurus</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">A refrigerated cabinet or room for preserving materials at or below 32F (0C).</obo:IAO_0000115>
</owl:Class>
<!-- http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C85644 -->
<owl:Class rdf:about="&Thesaurus;C85644">
<rdfs:label xml:lang="en">initial concentration</rdfs:label>
<rdfs:subClassOf rdf:resource="&Thesaurus;C41185"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:someValuesFrom rdf:resource="&Thesaurus;C70830"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:someValuesFrom rdf:resource="&obo;CHEBI_35225"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="&sp;FinalConcentration"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">NCI thesaurus</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">The first measured concentration of a compound in a substance. In pharmacology, the initial concentration is given only for bolus IV models.</obo:IAO_0000115>
</owl:Class>
<!-- http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C93484 -->
<owl:Class rdf:about="&Thesaurus;C93484">
<rdfs:label xml:lang="en">document version</rdfs:label>
<rdfs:subClassOf rdf:resource="&Thesaurus;C25714"/>
<owl:disjointWith rdf:resource="&sp;SoftwareVersion"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">NCI thesaurus</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">A representation of a particular edition or snapshot of a document as it exists at a particular point in time.</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.bioontology.org/ontology/MSH/D004864 -->
<owl:Class rdf:about="&MSH;D004864">
<rdfs:label xml:lang="en">equipment and supplies</rdfs:label>
<rdfs:subClassOf rdf:resource="&snap;MaterialEntity"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&obo;OBI_0000304"/>
<owl:someValuesFrom rdf:resource="&sp;Manufacturer"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:allValuesFrom rdf:resource="&sp;EquipmentAndSuppliesList"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasCatalogNumber"/>
<owl:someValuesFrom rdf:resource="&sp;CatalogNumber"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasName"/>
<owl:allValuesFrom rdf:resource="&sp;EquipmentOrSuppliesName"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="&obo;CHEBI_33893"/>
<owl:disjointWith rdf:resource="&obo;CHEBI_35225"/>
<owl:disjointWith rdf:resource="&obo;OBI_0000747"/>
<owl:disjointWith rdf:resource="&obo;OBI_0100026"/>
<owl:disjointWith rdf:resource="&sp;Manufacturer"/>
<owl:disjointWith rdf:resource="&sp;Primer"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">Medical Subject Headings (MeSH)</obo:IAO_0000412>
<obo:IAO_0000118 xml:lang="en">Device
Apparatus and Instruments
Device, Medical
Devices, Medical
Instruments and Apparatus
Inventory
Medical Device
Supplies and Equipment
MED DEVICE
EQUIPMENT SUPPLIES
MED DEVICES
APPARATUS INSTRUM
DEVICES MED
DEVICE MED
Devices
Equipment
Inventories
Medical Devices
Supplies</obo:IAO_0000118>
<obo:IAO_0000115 xml:lang="en">Expendable and nonexpendable equipment, supplies, apparatus, and instruments that are used in diagnostic, surgical, therapeutic, scientific, and experimental procedures.</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_33893 -->
<owl:Class rdf:about="&obo;CHEBI_33893">
<rdfs:label xml:lang="en">reagent</rdfs:label>
<rdfs:subClassOf rdf:resource="&snap;MaterialEntity"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:allValuesFrom rdf:resource="&sp;ReagentList"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasCatalogNumber"/>
<owl:someValuesFrom rdf:resource="&sp;CatalogNumber"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&obo;OBI_0000304"/>
<owl:someValuesFrom rdf:resource="&sp;Manufacturer"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="&obo;OBI_0000747"/>
<owl:disjointWith rdf:resource="&obo;OBI_0100026"/>
<owl:disjointWith rdf:resource="&sp;Manufacturer"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">ChEBI</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">A substance used in a chemical reaction to detect, measure, examine, or produce other substances.</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_35225 -->
<owl:Class rdf:about="&obo;CHEBI_35225">
<rdfs:label xml:lang="en">buffer</rdfs:label>
<rdfs:subClassOf rdf:resource="&snap;MaterialEntity"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasAlertMessage"/>
<owl:someValuesFrom rdf:resource="&sp;Hint"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:someValuesFrom rdf:resource="&sp;BufferList"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;has_part"/>
<owl:someValuesFrom rdf:resource="&Thesaurus;C85644"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasName"/>
<owl:allValuesFrom rdf:resource="&sp;BufferName"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasAlertMessage"/>
<owl:someValuesFrom rdf:resource="&Ontology1184060740;Class_122"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;has_part"/>
<owl:someValuesFrom rdf:resource="&sp;FinalConcentration"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasAlertMessage"/>
<owl:someValuesFrom rdf:resource="&sp;StorageCondition"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="&obo;OBI_0000747"/>
<owl:disjointWith rdf:resource="&obo;OBI_0100026"/>
<owl:disjointWith rdf:resource="&sp;Manufacturer"/>
<owl:disjointWith rdf:resource="&sp;Primer"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">ChEBI</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">Any substance or mixture of substances that, in solution (typically aqueous), resists change in pH upon addition of small amounts of acid or base.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">buffer compound</obo:IAO_0000118>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000010 -->
<owl:Class rdf:about="&obo;IAO_0000010">
<rdfs:label xml:lang="en">software</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000104"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasName"/>
<owl:allValuesFrom rdf:resource="&sp;SoftwareName"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:allValuesFrom rdf:resource="&sp;SoftwareList"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&sp;hasVersion"/>
<owl:allValuesFrom rdf:resource="&sp;SoftwareVersion"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000119 rdf:datatype="&xsd;string">GROUP: OBI</obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit.</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000030 -->
<owl:Class rdf:about="&obo;IAO_0000030">
<rdfs:label xml:lang="en">information content entity</rdfs:label>
<rdfs:subClassOf rdf:resource="&snap;GenericallyDependentContinuant"/>
<obo:IAO_0000112 rdf:datatype="&xsd;string">Examples of information content entites include journal articles, data, graphical layouts, and graphs.</obo:IAO_0000112>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000119 rdf:datatype="&xsd;string">OBI_0000142</obo:IAO_0000119>
<obo:IAO_0000115 rdf:datatype="&xsd;string">an information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000100 -->
<owl:Class rdf:about="&obo;IAO_0000100">
<rdfs:label xml:lang="en">data set</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000030"/>
<obo:IAO_0000115 rdf:datatype="&xsd;string">A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.</obo:IAO_0000115>
<obo:IAO_0000112 rdf:datatype="&xsd;string">Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).</obo:IAO_0000112>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000119 rdf:datatype="&xsd;string">group:OBI
OBI_0000042</obo:IAO_0000119>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000104 -->
<owl:Class rdf:about="&obo;IAO_0000104">
<rdfs:label xml:lang="en">plan specification</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000030"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000119 rdf:datatype="&xsd;string">OBI Plan and Planned Process branch
OBI_0000344</obo:IAO_0000119>
<obo:IAO_0000112 rdf:datatype="&xsd;string">PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a directive information entity that when concretized it is realized in a process in which the bearer tries to achieve the objectives, in part by taking the actions specified. Plan specifications includes parts such as objective specification, action specifications and conditional specifications.</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000300 -->
<owl:Class rdf:about="&obo;IAO_0000300">
<rdfs:label xml:lang="en">textual entity</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000030"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc.</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">Words, sentences, paragraphs, and the written (non-figure) parts of publications are all textual entities</obo:IAO_0000112>
<obo:IAO_0000118 xml:lang="en">text</obo:IAO_0000118>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000302 -->
<owl:Class rdf:about="&obo;IAO_0000302">
<rdfs:label xml:lang="en">author identification</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000300"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:someValuesFrom rdf:resource="&obo;IAO_0000321"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="&sp;ApplicationOfTheProtocol"/>
<obo:IAO_0000115 xml:lang="en">A textual entity intended to identify a particular author</obo:IAO_0000115>
<obo:IAO_0000412 xml:lang="en">IAO</obo:IAO_0000412>
<obo:IAO_0000112 xml:lang="en">orcid ID, O.Giraldo</obo:IAO_0000112>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000310 -->
<owl:Class rdf:about="&obo;IAO_0000310">
<rdfs:label xml:lang="en">document</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000030"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;has_part"/>
<owl:someValuesFrom rdf:resource="&sp;PurposeOfProtocol"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;has_part"/>
<owl:someValuesFrom rdf:resource="&obo;IAO_0000314"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="&xsd;string">A collection of information content entities intended to be understood together as a whole</obo:IAO_0000115>
<obo:IAO_0000112 rdf:datatype="&xsd;string">A journal article, patent application, laboratory notebook, or a book</obo:IAO_0000112>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000314 -->
<owl:Class rdf:about="&obo;IAO_0000314">
<rdfs:label xml:lang="en">document part</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000030"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:someValuesFrom rdf:resource="&obo;IAO_0000310"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000112 xml:lang="en">An abstract, introduction, method or results section.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">an information content entity that is part of a document</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000321 -->
<owl:Class rdf:about="&obo;IAO_0000321">
<rdfs:label xml:lang="en">author list</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;has_part"/>
<owl:someValuesFrom rdf:resource="&obo;IAO_0000302"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000412 xml:lang="en">IAO</obo:IAO_0000412>
<obo:IAO_0000112 xml:lang="en">Lawrence Hunter and Kevin Brettonel Cohen</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">part of a document that enumerates the authors of the document</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000136 -->
<owl:Class rdf:about="&obo;OBI_0000136">
<rdfs:label xml:lang="en">incubator</rdfs:label>
<rdfs:subClassOf rdf:resource="&MSH;D004864"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000119 rdf:datatype="&xsd;string">http://www.medterms.com/script/main/art.asp?articlekey=18426</obo:IAO_0000119>
<obo:IAO_0000112 xml:lang="en">Incubators are used in microbiology for culturing (growing) bacteria and other microorganisms. Incubators in tissue culture rooms are used for culturing stem cells, lymphocytes, skin fibroblasts and other types of cells</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a device in which environmental conditions (light, photoperiod, temperature, humidity, etc.) can be controlled</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000671 -->
<owl:Class rdf:about="&obo;OBI_0000671">
<rdfs:label xml:lang="en">sample from organism</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;OBI_0000747"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:someValuesFrom rdf:resource="&sp;MaterialsSection"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">a material obtained from an organism in order to be a representative of the whole</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000747 -->
<owl:Class rdf:about="&obo;OBI_0000747">
<rdfs:label xml:lang="en">material sample</rdfs:label>
<rdfs:subClassOf rdf:resource="&snap;MaterialEntity"/>
<owl:disjointWith rdf:resource="&sp;Kit"/>
<owl:disjointWith rdf:resource="&sp;Manufacturer"/>
<owl:disjointWith rdf:resource="&sp;Primer"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">A material entity that has the material sample role</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">blood drawn from patient to measure his systemic glucose level. A population of humans with HIV enrolled in a study taken to represent patients with HIV in general.</obo:IAO_0000112>
<obo:IAO_0000118 xml:lang="en">sample population</obo:IAO_0000118>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001087 -->
<owl:Class rdf:about="&obo;OBI_0001087">
<rdfs:label xml:lang="en">lyophilizer</rdfs:label>
<rdfs:subClassOf rdf:resource="&MSH;D004864"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000119 rdf:datatype="&xsd;string">http://en.wikipedia.org/wiki/Freeze_drying</obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">A device that is used to freeze dry material.</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001100 -->
<owl:Class rdf:about="&obo;OBI_0001100">
<rdfs:label xml:lang="en">microcentrifuge</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;OBI_0400106"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000119 rdf:datatype="&xsd;string">http://en.wikipedia.org/wiki/Laboratory_centrifuge</obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">A type of centrifuge that is designed for small tubes (0.2 ml to 2.0 ml), has a compact design, and has a small footprint.</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001128 -->
<owl:Class rdf:about="&obo;OBI_0001128">
<rdfs:label xml:lang="en">micropipette</rdfs:label>
<rdfs:subClassOf rdf:resource="&MSH;D004864"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000119 rdf:datatype="&xsd;string">http://www.answers.com/topic/micropipette</obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">A microinjection device that is used to measure very small volumes of liquids.</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0100026 -->
<owl:Class rdf:about="&obo;OBI_0100026">
<rdfs:label xml:lang="en">organism</rdfs:label>
<rdfs:subClassOf rdf:resource="&snap;MaterialEntity"/>
<owl:disjointWith rdf:resource="&sp;Kit"/>
<owl:disjointWith rdf:resource="&sp;Primer"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000119 rdf:datatype="&xsd;string">http://en.wikipedia.org/wiki/Organism</obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">fungus, animal, virus, plant</obo:IAO_0000112>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0400106 -->
<owl:Class rdf:about="&obo;OBI_0400106">
<rdfs:label xml:lang="en">centrifuge</rdfs:label>
<rdfs:subClassOf rdf:resource="&MSH;D004864"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000119 rdf:datatype="&xsd;string">http://en.wikipedia.org/wiki/Centrifuge</obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">A device with a rapidly rotating container that applies centrifugal force to its contents</obo:IAO_0000115>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0400116 -->
<owl:Class rdf:about="&obo;OBI_0400116">
<rdfs:label xml:lang="en">thermal cycler</rdfs:label>
<rdfs:subClassOf rdf:resource="&MSH;D004864"/>
<obo:IAO_0000119 rdf:datatype="&xsd;string">MO</obo:IAO_0000119>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">An instrument that is capable of repeatedly altering and maintaining specific temperatures for defined periods of time.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">DNA_amplifier
PCR_machine
Polymerase_Chain_Reaction_ machine
thermocycler</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">Piko(tm) 96-well Thermal Cycler</obo:IAO_0000112>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0400120 -->
<owl:Class rdf:about="&obo;OBI_0400120">
<rdfs:label xml:lang="en">temperature control bath</rdfs:label>
<rdfs:subClassOf rdf:resource="&MSH;D004864"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000119 rdf:datatype="&xsd;string">OBI Instrument branch</obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">A temperature_control_bath is a device that has the function to regulate the temperature of a material, the function to contain fluid and the function to vary and maintain the temperature of the contained fluid. Heat exchange (energy transfer) between the material and the heating element is facilitated via the contained fluid. A temperature_control_bath is composed of a container, a heating element and/or a cooling element and a means to adjust the needed temperature. In most cases also a timer and a means to stir the fluid is provided as well.</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">VWR Signature Deep-Chamber Heated Water Bath. A water bath is used for temperatures up to 100 degrees C. An oil bath is employed for temperatures over 100 degrees C.</obo:IAO_0000112>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0400155 -->
<owl:Class rdf:about="&obo;OBI_0400155">
<rdfs:label xml:lang="en">water bath</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;OBI_0400120"/>
<obo:IAO_0000412 rdf:datatype="&xsd;string">OBI</obo:IAO_0000412>
<obo:IAO_0000115 xml:lang="en">A water bath is a temperature control bath in which a water acts as contact medium enabling temperature transfer from the heating element or cooling element to the sample. The temperature can be controlled in the 0 to 100 degree centigrade range (under normal pressure).</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">A water bath was used to allow for cell incubation at 38 degree centigrade for 8 hours.</obo:IAO_0000112>
</owl:Class>
<!-- http://purl.org/net/SMARTprotocol#AdvantageOfTheProtocol -->
<owl:Class rdf:about="&sp;AdvantageOfTheProtocol">
<rdfs:label xml:lang="en">advantage of the Protocol</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000300"/>
<owl:disjointWith rdf:resource="&sp;PrimerSequence"/>
<obo:IAO_0000115 xml:lang="en">Advantage of the protocol is a subclass of textual entity. It should be made clear in which situations the Protocol has been successfully employed.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">http://www.nature.com/nprot/info/gta.html</obo:IAO_0000119>
</owl:Class>
<!-- http://purl.org/net/SMARTprotocol#ApplicationOfTheProtocol -->
<owl:Class rdf:about="&sp;ApplicationOfTheProtocol">
<rdfs:label xml:lang="en">application of the protocol</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000300"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:allValuesFrom rdf:resource="&sp;IntroductionSection"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="&sp;CatalogNumber"/>
<owl:disjointWith rdf:resource="&sp;LimitationOfTheProtocol"/>
<owl:disjointWith rdf:resource="&sp;PrimerSequence"/>
<owl:disjointWith rdf:resource="&sp;ProvenanceOfTheProtocol"/>
<owl:disjointWith rdf:resource="&sp;PurposeOfProtocol"/>
<owl:disjointWith rdf:resource="&sp;TitleOfProtocol"/>
<owl:disjointWith rdf:resource="&Ontology1184060740;Class_121"/>
<obo:IAO_0000115 xml:lang="en">Applications of the protocol is a subclass of textual entity. Applications of the protocol list the full diversity of the applications of the method and support if is possible to extend the range of applications of the protocol.</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">The protocol works in northern blot assays using cactus, agave, banana, tomato, Arabidopsis and tobacco. Allwood, J.W., et al., Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics. Metabolomics, 2009. 5(4): p. 479-496.</obo:IAO_0000112>
</owl:Class>
<!-- http://purl.org/net/SMARTprotocol#Bag -->
<owl:Class rdf:about="&sp;Bag">
<rdfs:label xml:lang="en">bag</rdfs:label>
<rdfs:subClassOf rdf:resource="&MSH;D004864"/>
<obo:IAO_0000115 xml:lang="en">A bag is a supply. A bag is a simple tool in the form of a non-rigid container.</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">Laboratory bags: autoclavable biohazard bags, specimen/document zipper bags</obo:IAO_0000112>
</owl:Class>
<!-- http://purl.org/net/SMARTprotocol#BufferList -->
<owl:Class rdf:about="&sp;BufferList">
<rdfs:label xml:lang="en">buffer list</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;IAO_0000100"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&ro;part_of"/>
<owl:someValuesFrom rdf:resource="&sp;MaterialsSection"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="&sp;EquipmentAndSuppliesList"/>
<owl:disjointWith rdf:resource="&sp;PrimerList"/>
<owl:disjointWith rdf:resource="&sp;SoftwareList"/>
<obo:IAO_0000115 xml:lang="en">Buffer list is a data set of the names or identifiers of the buffers that are part of materials section of a protocol.</obo:IAO_0000115>
</owl:Class>