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query.json
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BaseQuery
{
"query": {
"bool": {
"must": {
"query_string": {
"query": "iliitis",
"default_operator": "AND",
"default_field": "text"
}
},
"filter": [
{
"term": {
"encounter_department_specialty": "Geriatrics"
}
},
{
"term": {
"encounter_department_specialty": "Pediatrics"
}
}
]
}
},
"size": 0
}
/settings/preferences
{
"Epic Notes": {
"Epic Categories": {
"Encounter Department Specialty": {
"id": 27,
"label": "Encounter Department Specialty",
"ontology": {
"id": 1,
"name": "Epic Categories",
"description": "what shows in Epic"
},
"displayOrder": 10,
"aggregate": false,
"countDistinct": false,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false,
"corpus": {
"id": 1,
"name": "Epic Notes"
},
"field": {
"id": 12,
"fieldName": "encounter_department_specialty",
"aggregatable": true,
"exportable": false,
"contextFilterField": false,
"dataTypeName": "NOT_ANALYZED_STRING",
"description": "Specialty name in Epic"
}
},
"Encounter Id": {
"id": 23,
"label": "Encounter Id",
"ontology": {
"id": 1,
"name": "Epic Categories",
"description": "what shows in Epic"
},
"displayOrder": 10,
"aggregate": false,
"countDistinct": false,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": true,
"corpus": {
"id": 1,
"name": "Epic Notes"
},
"field": {
"id": 8,
"fieldName": "encounter_id",
"aggregatable": true,
"exportable": false,
"contextFilterField": false,
"dataTypeName": "LONG",
"description": "Epic visit number"
}
},
"Filing Datetime": {
"id": 21,
"label": "Filing Datetime",
"ontology": {
"id": 1,
"name": "Epic Categories",
"description": "what shows in Epic"
},
"displayOrder": 10,
"aggregate": false,
"countDistinct": false,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": true,
"isNumeric": false,
"corpus": {
"id": 1,
"name": "Epic Notes"
},
"field": {
"id": 6,
"fieldName": "filing_datetime",
"aggregatable": true,
"exportable": false,
"contextFilterField": false,
"dataTypeName": "DATETIME",
"description": "When note was filed"
}
},
"Mrn": {
"id": 22,
"label": "Mrn",
"ontology": {
"id": 1,
"name": "Epic Categories",
"description": "what shows in Epic"
},
"displayOrder": 10,
"aggregate": false,
"countDistinct": true,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false,
"corpus": {
"id": 1,
"name": "Epic Notes"
},
"field": {
"id": 7,
"fieldName": "mrn",
"aggregatable": true,
"exportable": false,
"contextFilterField": false,
"dataTypeName": "NOT_ANALYZED_STRING",
"description": "Epic patient identifier"
}
},
"Prov Type": {
"id": 19,
"label": "Prov Type",
"ontology": {
"id": 1,
"name": "Epic Categories",
"description": "what shows in Epic"
},
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false,
"corpus": {
"id": 1,
"name": "Epic Notes"
},
"field": {
"id": 4,
"fieldName": "prov_type",
"aggregatable": true,
"exportable": false,
"contextFilterField": false,
"dataTypeName": "NOT_ANALYZED_STRING",
"description": "Provider type in Epic name"
}
},
"Service Date": {
"id": 20,
"label": "Service Date",
"ontology": {
"id": 1,
"name": "Epic Categories",
"description": "what shows in Epic"
},
"displayOrder": 10,
"aggregate": false,
"countDistinct": false,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": true,
"isNumeric": false,
"corpus": {
"id": 1,
"name": "Epic Notes"
},
"field": {
"id": 5,
"fieldName": "service_date",
"aggregatable": true,
"exportable": false,
"contextFilterField": false,
"dataTypeName": "DATE",
"description": "Date of Service"
}
}
},
"HL7 LOINC": {
"Role": {
"id": 18,
"label": "Role",
"ontology": {
"id": 2,
"name": "HL7 LOINC",
"description": "DO Axis values"
},
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false,
"corpus": {
"id": 1,
"name": "Epic Notes"
},
"field": {
"id": 3,
"fieldName": "role",
"aggregatable": true,
"exportable": false,
"contextFilterField": false,
"dataTypeName": "NOT_ANALYZED_STRING",
"description": "Provider role axis in HL7-LOINC DO"
}
},
"Smd": {
"id": 26,
"label": "Smd",
"ontology": {
"id": 2,
"name": "HL7 LOINC",
"description": "DO Axis values"
},
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false,
"corpus": {
"id": 1,
"name": "Epic Notes"
},
"field": {
"id": 11,
"fieldName": "smd",
"aggregatable": true,
"exportable": false,
"contextFilterField": false,
"dataTypeName": "NOT_ANALYZED_STRING",
"description": "subject matter domain"
}
}
},
"NLP Annotations": {
"Medical Concepts": {
"id": 25,
"label": "Medical Concepts",
"ontology": {
"id": 3,
"name": "NLP Annotations",
"description": "NLP annotations"
},
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"numberOfFilterOptions": 25,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false,
"corpus": {
"id": 1,
"name": "Epic Notes"
},
"field": {
"id": 10,
"fieldName": "cuis",
"aggregatable": true,
"exportable": false,
"contextFilterField": false,
"dataTypeName": "NOT_ANALYZED_STRING",
"description": "UMLS CUIs identified by BioMedICUS NLP pipeline"
}
}
}
},
"Surgical Pathology Reports": {
"NLP Annotations": {
"Medical Concepts": {
"id": 30,
"label": "Medical Concepts",
"ontology": {
"id": 3,
"name": "NLP Annotations",
"description": "NLP annotations"
},
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"numberOfFilterOptions": 50,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false,
"corpus": {
"id": 2,
"name": "Surgical Pathology Reports"
},
"field": {
"id": 15,
"fieldName": "cuis",
"aggregatable": true,
"exportable": false,
"contextFilterField": false,
"dataTypeName": "NOT_ANALYZED_STRING",
"description": "UMLS CUIs identified by BioMedICUS NLP pipeline"
}
}
}
}
}
Search.js
{
"growl": {},
"searchService": {
"searchHistory": [
{
"query": {
"label": "plate"
},
"registration": {
"id": 8,
"authorizedContext": "Clinical Notes"
}
},
{
"query": {
"label": "iliitis"
},
"registration": {
"id": 7,
"authorizedContext": "Clinical Notes"
}
},
{
"query": {
"label": "iliitis"
},
"registration": {
"id": 6,
"authorizedContext": "Clinical Notes"
}
},
{
"query": {
"label": "iliitis"
},
"registration": {
"id": 4,
"authorizedContext": "Clinical Notes"
}
}
]
},
"uiService": {},
"userInput": "plate",
"context": {
"requestId": null,
"label": "Clinical Notes",
"contextFilterValue": "0",
"description": "description unavailable",
"username": null,
"candidateCorpora": [
{
"id": 1,
"name": "Clinical Notes",
"glyph": "fa-file-text-o",
"metadata": {
"tooltip": "Includes Clinical Notes",
"searchable": true,
"filtered": false,
"url": "http://nlp05.ahc.umn.edu:9200/notes_v3/note/_search",
"scrollUrl": "http://nlp05.ahc.umn.edu:9200/_search/scroll",
"defaultSearchField": "text",
"contextFilterField": "authorized_context_filter_value",
"aggregations": {
"Epic Categories": [
{
"id": 4,
"label": "Prov Type",
"fieldName": "prov_type",
"fieldDescription": "Provider type in Epic name",
"ontology": "Epic Categories",
"username": "nlppier",
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"count": null,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false
},
{
"id": 12,
"label": "Encounter Department Specialty",
"fieldName": "encounter_department_specialty",
"fieldDescription": "Specialty name in Epic",
"ontology": "Epic Categories",
"username": "nlppier",
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"count": null,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false
}
],
"HL7 LOINC": [
{
"id": 3,
"label": "Role",
"fieldName": "role",
"fieldDescription": "Provider role axis in HL7-LOINC DO",
"ontology": "HL7 LOINC",
"username": "nlppier",
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"count": null,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false
},
{
"id": 11,
"label": "Smd",
"fieldName": "smd",
"fieldDescription": "subject matter domain",
"ontology": "HL7 LOINC",
"username": "nlppier",
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"count": null,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false
}
],
"NLP Annotations": [
{
"id": 10,
"label": "Medical Concepts",
"fieldName": "cuis",
"fieldDescription": "UMLS CUIs identified by BioMedICUS NLP pipeline",
"ontology": "NLP Annotations",
"username": "nlppier",
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"count": null,
"numberOfFilterOptions": 25,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false
}
]
}
},
"status": {
"searchingDocs": false,
"computingAggs": false,
"dirty": false
},
"resultsOpacity": {
"dimmed": {
"opacity": 0.2
},
"bright": {
"opacity": 1
}
},
"opacity": {
"opacity": 1
},
"results": {},
"appliedFilters": {
"Prov Type": [
{
"term": {
"prov_type": "Physician"
}
},
{
"term": {
"prov_type": "Registered Dietitian"
}
}
]
},
"pagination": {
"notesPerPage": 100,
"from": 0,
"maxDocs": 0,
"maxPage": 0,
"maxFrom": 10000,
"currentPage": 0,
"truncated": false
},
"selected": true
},
{
"id": 2,
"name": "Surgical Pathology Reports",
"glyph": "icon-i-pathology",
"metadata": {
"tooltip": "Excludes Surgical Pathology Reports",
"searchable": false,
"filtered": null,
"url": null,
"scrollUrl": null,
"defaultSearchField": null,
"contextFilterField": null
},
"status": {
"searchingDocs": false,
"computingAggs": false,
"dirty": true
},
"resultsOpacity": {
"dimmed": {
"opacity": 0.2
},
"bright": {
"opacity": 1
}
},
"opacity": {
"opacity": 0.2
},
"results": {}
}
]
},
"registration": {
"id": 10,
"authorizedContext": "Clinical Notes",
"username": "nouserservice.user",
"uuid": "7877d74d-e470-452e-901c-3c1a214e9989",
"queries": null
},
"searchIconClass": "fa fa-search",
"status": {
"dirty": true,
"version": 1
},
"cuiExpansionEnabled": false,
"similarityExpansionEnabled": false,
"cuiExpansion": {},
"relatednessExpansion": {},
"options": {
"relatednessExpansion": {
"on": false,
"style": {}
}
}
}
----refactor
CORPUS
{
"id": 1,
"name": "Clinical Notes",
"glyph": "fa-file-text-o",
"metadata": {
"tooltip": "Includes Clinical Notes",
"searchable": true,
"filtered": false,
"url": "http://nlp05.ahc.umn.edu:9200/notes_v3/note/_search",
"scrollUrl": "http://nlp05.ahc.umn.edu:9200/_search/scroll",
"defaultSearchField": "text",
"contextFilterField": "authorized_context_filter_value",
"aggregations": {
"Clinical Notes": {
"Epic Categories": {
"Encounter Department Specialty": {
"id": 16,
"label": "Encounter Department Specialty",
"ontology": {
"id": 1,
"name": "Epic Categories",
"description": "what shows in Epic"
},
"displayOrder": 10,
"aggregate": true,
"countDistinct": false,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": false,
"corpus": {
"id": 1,
"name": "Epic Notes"
},
"field": {
"id": 1,
"fieldName": "encounter_department_specialty",
"aggregatable": true,
"exportable": true,
"contextFilterField": false,
"dataTypeName": "NOT_ANALYZED_STRING",
"description": "Specialty name in Epic"
}
},
"Encounter Id": {
"id": 18,
"label": "Encounter Id",
"ontology": {
"id": 1,
"name": "Epic Categories",
"description": "what shows in Epic"
},
"displayOrder": 10,
"aggregate": false,
"countDistinct": false,
"numberOfFilterOptions": 5,
"includeInExport": false,
"isTemporal": false,
"isNumeric": true,
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