CFDE Announcements to Post 08-29-2022

[jeremywalter]

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[ctb]

f## New releases

(please do send to cross poll)

edit as needed:

Hi folks,

I am pleased to announce that the content registry is now up on the portal!!

This first release annotates the following resources in the portal:

• anatomy: 321 of 334
• disease: 1872 of 1894
• compound: 45898 of 73498
• gene: 19962 of 19975
• protein: 64145 of 64145

Here are a few links to explore and share:

GTEx expression data on an anatomy page:
https://app.nih-cfde.org/chaise/record/#1/CFDE:anatomy/nid=172

Compound information and visualization:
https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/nid=76268

Links to the knowledge graph on compound page:
https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/nid=3

MANY links and visualization and appyters on a gene page:
https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/nid=3858

Integration of genes with metabolomics and LINCS on a gene page:
https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/nid=1

and there is a list of more links here:

nih-cfde/update-content-registry#59 (comment)

that shows off all the different types of information being displayed.

I’d like to shout out to Rayna for leading the charge on the last sprint, and Jessica and Arthur as well!

best,
—titus

[raynamharris]

Slight edit to the above, diff acknowledgements, one number fixed, URLs based on id not nid

New releases

We pleased to announce that the content registry is now up on the portal!! Thanks to participation from Glycosciences, IDG, LINCS, Metabolomics Workbench, and SPARC, this first release annotates the following resources in the portal:

• anatomy: 321 of 334
• compound: 45898 of 73498
• disease: 1872 of 1894
• gene: 19962 of 19975
• protein: 64145 of 64145

Here are a few links to explore and share:

• GTEx expression data on an anatomy page:
  https://app.nih-cfde.org/chaise/record/#1/CFDE:anatomy/id=UBERON%3A0000007
• Compound information and visualization:
  https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=G99997WS
• Links to the knowledge graph on compound page:
  https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=10000456
• MANY links and visualization and Appyters on a gene page:
  https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000000003
• Integration of genes with Metabolomics and LINCS on a gene page:
  https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000000419

[jeremywalter]

CFDE Announcements -- DRAFT DRAFT DRAFT

Cross-Pollination Meeting

Next week our CP Meeting will have a presentation on the CFDE Senescence Network (SenNet). The meeting will take place on Tuesday, Septeber 6th, at 11am PT / 2pm ET. Our remaining 2022 Cross-Pollination meetings will be showcasing CFDE Partnership Projects as reflected on the schedule. However, there is still space for additional talks each month. If you are interested please sign up to present at an upcoming Cross Pollination Meeting. Regular Cross-Pollination events take place on the first Tuesday of every month (Sep 6, Oct 4, Nov 8, and Dec 6), and we have 7 slots available. View the Cross-Pollination Schedule for more details. Email [email protected] if you would like to present.

Content Registry Release

We are pleased to announce that the content registry is now up on the portal!! Thanks to participation from Glycosciences, IDG, LINCS, Metabolomics Workbench, and SPARC, this first release annotates the following resources in the portal:

• anatomy: 321 of 334
• compound: 45898 of 73498
• disease: 1872 of 1894
• gene: 19962 of 19975
• protein: 64145 of 64145

Here are a few links to explore and share:

• GTEx expression data on an anatomy page:
  https://app.nih-cfde.org/chaise/record/#1/CFDE:anatomy/id=UBERON%3A0000007
• Compound information and visualization:
  https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=G99997WS
• Links to the knowledge graph on compound page:
  https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=10000456
• MANY links and visualization and Appyters on a gene page:
  https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000000003
• Integration of genes with Metabolomics and LINCS on a gene page:
  https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000000419

CFDE Videos for Council of Councils

Thanks to everyone who submitted (draft) video demonstrations of CFDE technical products in advance of the Council of Councils meeting! Most of the videos can be viewed on a single webpage at https://nih-cfde.github.io/2022-CoC-Videos/. Please watch the videos and provide your feedback here.

Working Group Updates

You can find a list of CFDE WGs and linked agendas on the Cross-Pollination Meeting Schedule. Currently scheduled working group meetings are as follow:

Working Group	Date	Time	Agenda
Knowledge Graph	Sep 20th	12pm PT / 3pm ET	Knowledge Graph WG
Ontology	Sep 7th	8am PT / 11am ET	Ontology WG

Contributing

You can contribute to the next announcements by commenting on the open announcements issue in this repository. Share your events and updates by posting links and descriptions in our announcements issue! If you have questions about these or other events/activities in the CFDE, contact our helpdesk at [email protected]

Thank you all for your efforts and have a great week!