Next week our CP Meeting will have a presentation on the CFDE Senescence Network (SenNet). We have space for another talk if you are ready to present! The meeting will take place on Tuesday, Septeber 6th, at 11am PT / 2pm ET. Our remaining 2022 Cross-Pollination meetings will be showcasing CFDE Partnership Projects as reflected on the schedule. However, there is still space for additional talks each month. If you are interested please sign up to present at an upcoming Cross Pollination Meeting. Regular Cross-Pollination events take place on the first Tuesday of every month (Sep 6, Oct 4, Nov 8, and Dec 6), and we have 7 slots available. View the Cross-Pollination Schedule for more details. Email [email protected] if you would like to present.
We are pleased to announce that the content registry is now up on the portal!! Thanks to participation from Glycosciences, IDG, LINCS, Metabolomics Workbench, and SPARC, this first release annotates the following resources in the portal:
- anatomy: 321 of 334
- compound: 45898 of 73498
- disease: 1872 of 1894
- gene: 19962 of 19975
- protein: 64145 of 64145
Here are a few links to explore and share:
- GTEx expression data on an anatomy page: https://app.nih-cfde.org/chaise/record/#1/CFDE:anatomy/id=UBERON%3A0000007
- Compound information and visualization: https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=G99997WS
- Links to the knowledge graph on compound page: https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=10000456
- MANY links and visualization and Appyters on a gene page: https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000000003
- Integration of genes with Metabolomics and LINCS on a gene page: https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000000419
View the release notes for more information about the workflows and contributors at https://github.com/nih-cfde/update-content-registry/releases/tag/2022.08.
The next data submission deadline for the CFDE Portal will be Friday, September 16. All groups who would like to update their data must submit and approve it by this deadline.
If you would not like to update or submit new data, no action is required on your part. Previously submitted data will be included in this data release.
- The latest master JSON schema: https://osf.io/c63aw/
- The submission script and prep tables: https://osf.io/bq6k9/
- Informational wiki: https://github.com/nih-cfde/published-documentation/wiki/C2M2-Table-Summary
Please contact the help desk with any questions at: [email protected]
Thanks to everyone who submitted (draft) video demonstrations of CFDE technical products in advance of the Council of Councils meeting! Most of the videos can be viewed on a single webpage at https://nih-cfde.github.io/2022-CoC-Videos/. Please watch the videos and provide your feedback here.
You can find a list of CFDE WGs and linked agendas on the Cross-Pollination Meeting Schedule. Currently scheduled working group meetings are as follow:
| Working Group | Date | Time | Agenda |
|---|---|---|---|
| Knowledge Graph | Sep 20th | 12pm PT / 3pm ET | Knowledge Graph WG |
| Ontology | Sep 7th | 8am PT / 11am ET | Ontology WG |
You can contribute to the next announcements by commenting on the open announcements issue in this repository. Share your events and updates by posting links and descriptions in our announcements issue! If you have questions about these or other events/activities in the CFDE, contact our helpdesk at [email protected]
Thank you all for your efforts and have a great week!