error running test set

[EladH1]

Description of the bug

Hi,
When not running from the folder (running the 'pulled' pipeline)
my current workdir is home: ~/

I get file not exist:

ERROR ~ Validation of pipeline parameters failed!

-- Check '.nextflow.log' file for details
The following invalid input values have been detected:

• --input (assets/samplesheet_small.csv): the file or directory 'assets/samplesheet_small.csv' does not exist

-- Check script '.nextflow/assets/nf-core/variantbenchmarking/./subworkflows/local/utils_nfcore_variantbenchmarking_pipeline/../../nf-core/utils_nfschema_plugin/main.nf' at line: 39 or see '.nextflow.log' file for more details

Command used and terminal output

nextflow run variantbenchmarking -profile docker,test --outdir res_test

Relevant files

No response

System information

No response

[kubranarci]

Dear @EladH1 please try to run pipeline with

nextflow run main.nf -profile docker,test --outdir res_test

test profile is working fine on my tests.

Best

[EladH1]

Hello,
The error apears when running from the diffrent folder:

nextflow run .nextflow/assets/nf-core/variantbenchmarking/main.nf -profile docker,test --outdir res_test

Best,
E

[kubranarci]

I see, the path in --input is not relative, that must be the problem. I will fix it. thanks!