diff --git a/testdata-trim/CPrimers.fasta b/testdata-trim/CPrimers.fasta new file mode 100644 index 000000000..8293d331a --- /dev/null +++ b/testdata-trim/CPrimers.fasta @@ -0,0 +1,2 @@ +>Calpha +GCGAYGACCACGTTCCCATCT \ No newline at end of file diff --git a/testdata-trim/Sample1_R1.fastq.gz b/testdata-trim/Sample1_R1.fastq.gz new file mode 100755 index 000000000..1cf75ce69 Binary files /dev/null and b/testdata-trim/Sample1_R1.fastq.gz differ diff --git a/testdata-trim/Sample1_R2.fastq.gz b/testdata-trim/Sample1_R2.fastq.gz new file mode 100755 index 000000000..12d7064a1 Binary files /dev/null and b/testdata-trim/Sample1_R2.fastq.gz differ diff --git a/testdata-trim/linker.fasta b/testdata-trim/linker.fasta new file mode 100644 index 000000000..edfdf75a9 --- /dev/null +++ b/testdata-trim/linker.fasta @@ -0,0 +1,4 @@ +>race_linker_1 +GGGG +>race_linker_2 +AAAAGGGG \ No newline at end of file diff --git a/testdata-trim/samplesheet.tsv b/testdata-trim/samplesheet.tsv new file mode 100644 index 000000000..a9aa0225d --- /dev/null +++ b/testdata-trim/samplesheet.tsv @@ -0,0 +1,2 @@ +sample_id filename_R1 filename_R2 subject_id species pcr_target_locus treatment tissue +Sample1 https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-trim/Sample1_R1.fastq.gz https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-trim/Sample1_R2.fastq.gz Sample1 mouse IG treatment blood diff --git a/testdata-trim/umi_pattern.fasta b/testdata-trim/umi_pattern.fasta new file mode 100644 index 000000000..e8aac19d5 --- /dev/null +++ b/testdata-trim/umi_pattern.fasta @@ -0,0 +1,4 @@ +>umi-linker1 +NNNNTNNNNTNNNNTCTTGGGG +>umi-linker2 +NNNNTNNNNTNNNNTCTTAAAAGGGG