Important! Template update for nf-core/tools v3.1.0 #1747
9 tests run, 0 passed, 0 skipped, 9 failed.
Annotations
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Run with profile test | --aligner bwa-mem --save_reference | skip QC/recal/md
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/32e6f6b6bf722dda084f4a86b2ca64ba/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.10.2 is available - Please consider updating your version to it
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Run with profile test | --aligner dragmap --save_reference --build_only_index
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/e7bd5aad2029192170654fda5308289/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.10.2 is available - Please consider updating your version to it
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Run with profile test | --tools merge,snpeff,vep
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/a6eae50a4c682d0c3809489d21e5ad87/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.10.2 is available - Please consider updating your version to it
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Run with profile test
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/663794ac9140452cedd97730f3c4f983/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.10.2 is available - Please consider updating your version to it
Check failure on line 1 in Test pipeline when starting from markduplicates
github-actions / JUnit Test Report
Test pipeline when starting from markduplicates.Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step markduplicates --tools null
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/7907c5a2fc469db7bc255e20da30229b/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.10.2 is available - Please consider updating your version to it
Check failure on line 1 in Test pipeline when starting from prepare recalibration
github-actions / JUnit Test Report
Test pipeline when starting from prepare recalibration.Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step prepare_recalibration --skip_tools baserecalibrator --tools strelka
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/7c19fc3fee05af218dd112c72dbb9520/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.10.2 is available - Please consider updating your version to it
Check failure on line 1 in Test pipeline when starting from recalibration
github-actions / JUnit Test Report
Test pipeline when starting from recalibration.Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step recalibrate --tools null
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/9dfb957e4c392bc1f09b0ef5513dd1c/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.10.2 is available - Please consider updating your version to it
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Run with profile test | --tools controlfreec --no_intervals | somatic | stub
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/18094ee522efdb4e72441f9c3596018f/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.10.2 is available - Please consider updating your version to it
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Run with profile test | --tools strelka | somatic
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/905ea0e770881b92655672a0f2677138/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.10.2 is available - Please consider updating your version to it