From 385becf2d75bb5d7f93c00a24f9116e97a970d0c Mon Sep 17 00:00:00 2001 From: maxulysse Date: Mon, 28 Oct 2024 12:03:12 +0100 Subject: [PATCH 1/3] fix tests from upstream --- modules.json | 2 +- subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/modules.json b/modules.json index f15b1f14c5..75fec0dbc7 100644 --- a/modules.json +++ b/modules.json @@ -525,7 +525,7 @@ }, "utils_nfschema_plugin": { "branch": "master", - "git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c", + "git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e", "installed_by": ["subworkflows"] }, "vcf_annotate_ensemblvep": { diff --git a/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test b/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test index 842dc432af..8fb3016487 100644 --- a/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test +++ b/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test @@ -42,7 +42,7 @@ nextflow_workflow { params { test_data = '' - outdir = 1 + outdir = null } workflow { @@ -94,7 +94,7 @@ nextflow_workflow { params { test_data = '' - outdir = 1 + outdir = null } workflow { From 38ee95adff046996ffb1cd768159d94c6ffce995 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Mon, 28 Oct 2024 12:04:57 +0100 Subject: [PATCH 2/3] update CHANGELOG --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index c6e9074b10..1341dc8c42 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -34,6 +34,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [1693](https://github.com/nf-core/sarek/pull/1693) - Fixes flowcell retrieval during samplesheet parsing - [1694](https://github.com/nf-core/sarek/pull/1694) - Fix manifest DOI display on CLI - [1695](https://github.com/nf-core/sarek/pull/1695) - Fix and update input_schema.json +- [1702](https://github.com/nf-core/sarek/pull/1702) - Update nf-schema tests that were not failing on lenient mode ### Removed From a02780405fd5f5228c0535406f9514e57687b5e2 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Mon, 28 Oct 2024 14:15:43 +0100 Subject: [PATCH 3/3] latest everything --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 7249747614..8ed6cebe7e 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -33,7 +33,7 @@ jobs: matrix: NXF_VER: - "24.04.2" - # - "latest-everything" + - "latest-everything" filter: ["workflow", "function", "pipeline"] # filter: ["process", "workflow", "function", "pipeline"] profile: ["conda", "docker", "singularity"]