From ecda5a03bd5d68179bfb0606ef0a995dce4f1ab5 Mon Sep 17 00:00:00 2001 From: FriederikeHanssen Date: Wed, 11 Dec 2024 17:27:52 +0000 Subject: [PATCH 1/2] Remove channel and name from local modules --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index eca7af51a..abdf922c2 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -54,6 +54,7 @@ A set of connecting glaciers. - [1746](https://github.com/nf-core/sarek/pull/1746) - Fix Sentieon module inputs - [1752](https://github.com/nf-core/sarek/pull/1752) - Add `indexcov` and `lofreq` to full size tests. Amend overview figures. - [1754](https://github.com/nf-core/sarek/pull/1754) - Fix test string +- [1755](https://github.com/nf-core/sarek/pull/1755) - Remove `default` channel and name from local modules ### Removed @@ -69,6 +70,7 @@ A set of connecting glaciers. | `deepvariant` | 1.5.0 | 1.6.1 | | `ensemblvep` | 111.0 | 113.0 | | `fgbio` | 2.0.2 | 2.1.2 | +| `gawk` | 5.1.0 | 5.3.0 | | `htslib` | 1.20 | 1.21 | | `lofreq` | | 2.1.5 | | `multiqc` | 1.21 | 1.25.1 | From bee1722b8f2f56b9e45be2141057852c5dc7afc6 Mon Sep 17 00:00:00 2001 From: FriederikeHanssen Date: Wed, 11 Dec 2024 17:28:02 +0000 Subject: [PATCH 2/2] Remove channel and name from local modules --- modules/local/add_info_to_vcf/environment.yml | 4 +--- modules/local/create_intervals_bed/environment.yml | 4 +--- 2 files changed, 2 insertions(+), 6 deletions(-) diff --git a/modules/local/add_info_to_vcf/environment.yml b/modules/local/add_info_to_vcf/environment.yml index 34513c7f4..315f6dc67 100644 --- a/modules/local/add_info_to_vcf/environment.yml +++ b/modules/local/add_info_to_vcf/environment.yml @@ -1,7 +1,5 @@ -name: gawk channels: - conda-forge - bioconda - - defaults dependencies: - - anaconda::gawk=5.1.0 + - conda-forge::gawk=5.3.0 diff --git a/modules/local/create_intervals_bed/environment.yml b/modules/local/create_intervals_bed/environment.yml index 34513c7f4..315f6dc67 100644 --- a/modules/local/create_intervals_bed/environment.yml +++ b/modules/local/create_intervals_bed/environment.yml @@ -1,7 +1,5 @@ -name: gawk channels: - conda-forge - bioconda - - defaults dependencies: - - anaconda::gawk=5.1.0 + - conda-forge::gawk=5.3.0