diff --git a/CHANGELOG.md b/CHANGELOG.md index eca7af51a4..abdf922c27 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -54,6 +54,7 @@ A set of connecting glaciers. - [1746](https://github.com/nf-core/sarek/pull/1746) - Fix Sentieon module inputs - [1752](https://github.com/nf-core/sarek/pull/1752) - Add `indexcov` and `lofreq` to full size tests. Amend overview figures. - [1754](https://github.com/nf-core/sarek/pull/1754) - Fix test string +- [1755](https://github.com/nf-core/sarek/pull/1755) - Remove `default` channel and name from local modules ### Removed @@ -69,6 +70,7 @@ A set of connecting glaciers. | `deepvariant` | 1.5.0 | 1.6.1 | | `ensemblvep` | 111.0 | 113.0 | | `fgbio` | 2.0.2 | 2.1.2 | +| `gawk` | 5.1.0 | 5.3.0 | | `htslib` | 1.20 | 1.21 | | `lofreq` | | 2.1.5 | | `multiqc` | 1.21 | 1.25.1 | diff --git a/modules/local/add_info_to_vcf/environment.yml b/modules/local/add_info_to_vcf/environment.yml index 34513c7f4a..315f6dc67e 100644 --- a/modules/local/add_info_to_vcf/environment.yml +++ b/modules/local/add_info_to_vcf/environment.yml @@ -1,7 +1,5 @@ -name: gawk channels: - conda-forge - bioconda - - defaults dependencies: - - anaconda::gawk=5.1.0 + - conda-forge::gawk=5.3.0 diff --git a/modules/local/create_intervals_bed/environment.yml b/modules/local/create_intervals_bed/environment.yml index 34513c7f4a..315f6dc67e 100644 --- a/modules/local/create_intervals_bed/environment.yml +++ b/modules/local/create_intervals_bed/environment.yml @@ -1,7 +1,5 @@ -name: gawk channels: - conda-forge - bioconda - - defaults dependencies: - - anaconda::gawk=5.1.0 + - conda-forge::gawk=5.3.0