From 682839ae02ecb12dc75a20f75e79e93495e2e3d7 Mon Sep 17 00:00:00 2001 From: Pablo Date: Wed, 9 Oct 2024 13:01:06 +0200 Subject: [PATCH] bioconda, for intel Signed-off-by: Pablo --- modules/local/star_align_igenomes/main.nf | 2 +- modules/nf-core/bedtools/genomecov/environment.yml | 2 +- modules/nf-core/rsem/calculateexpression/environment.yml | 2 +- modules/nf-core/rsem/preparereference/environment.yml | 4 ++-- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/modules/local/star_align_igenomes/main.nf b/modules/local/star_align_igenomes/main.nf index 9e666cbab..f0469553d 100644 --- a/modules/local/star_align_igenomes/main.nf +++ b/modules/local/star_align_igenomes/main.nf @@ -2,7 +2,7 @@ process STAR_ALIGN_IGENOMES { tag "$meta.id" label 'process_high' - conda "seqera::star=2.6.1d bioconda::samtools conda-forge::gawk=5.1.0" + conda "bioconda::star=2.6.1d bioconda::samtools conda-forge::gawk=5.1.0" input: tuple val(meta), path(reads, stageAs: "input*/*") diff --git a/modules/nf-core/bedtools/genomecov/environment.yml b/modules/nf-core/bedtools/genomecov/environment.yml index b71d3b872..4d4e55eaf 100644 --- a/modules/nf-core/bedtools/genomecov/environment.yml +++ b/modules/nf-core/bedtools/genomecov/environment.yml @@ -5,4 +5,4 @@ channels: - bioconda - defaults dependencies: - - seqera::bedtools + - bioconda::bedtools diff --git a/modules/nf-core/rsem/calculateexpression/environment.yml b/modules/nf-core/rsem/calculateexpression/environment.yml index af6ea1704..47d0158ab 100644 --- a/modules/nf-core/rsem/calculateexpression/environment.yml +++ b/modules/nf-core/rsem/calculateexpression/environment.yml @@ -5,5 +5,5 @@ channels: - bioconda - defaults dependencies: - - seqera::rsem + - bioconda::rsem - bioconda::star diff --git a/modules/nf-core/rsem/preparereference/environment.yml b/modules/nf-core/rsem/preparereference/environment.yml index c4ef537cb..6abf71884 100644 --- a/modules/nf-core/rsem/preparereference/environment.yml +++ b/modules/nf-core/rsem/preparereference/environment.yml @@ -5,5 +5,5 @@ channels: - bioconda - defaults dependencies: - - seqera::rsem - - seqera::star=2.6.1d + - bioconda::rsem + - bioconda::star=2.6.1d