No error on GPU OOM Colabfold

[ppenev-eligo]

Description of the bug

When submitting the pipeline through Seqera the platform does not evoke a 1 exit status if colabfold runs out of memory on GPU. The pipeline returns a success 0 status which prevents retries with different GPUs.

Command used and terminal output

Generated through Seqera:

nextflow run 'https://github.com/nf-core/proteinfold' -name test_run -params-file 'https://api.cloud.seqera.io/ephemeral/[id].json' -with-tower -r [tower-hash]

Relevant files

task-6.command.out.txt

task-6.command.err.txt

System information

• Nextflow v24.10.3
• Google Cloud
• Executor = 'google-batch'
• container Docker [COLABFOLD_BATCH:nf-core/proteinfold_colabfold:dev]
• OS Linux DeepLearning VM with CUDA preinstalled; However the CUDA on the docker image is 12.6 which solves some jax issues.
• nf-core/proteinfold v1.1.1