diff --git a/modules/local/virusbreakend/Dockerfile b/modules/local/virusbreakend/Dockerfile index 50fb19ff..f3a41abb 100644 --- a/modules/local/virusbreakend/Dockerfile +++ b/modules/local/virusbreakend/Dockerfile @@ -1,31 +1,31 @@ FROM continuumio/miniconda3:23.5.2-0-alpine as build RUN \ - conda install conda-libmamba-solver + conda install conda-libmamba-solver RUN \ - echo -e > ~/.condarc '\ + echo -e > ~/.condarc '\ solver: libmamba\n\ channels:\n\ - - conda-forge\n\ - - bioconda\n\ - - defaults' + - conda-forge\n\ + - bioconda\n\ + - defaults' RUN \ - conda create -y -p /env/ \ - 'gridss=2.13.2=h50ea8bc_3' \ - 'bash' \ - 'coreutils' \ - 'findutils' \ - 'gawk' \ - 'grep' \ - 'procps-ng' \ - 'time' \ - 'util-linux' \ - 'which' + conda create -y -p /env/ \ + 'gridss=2.13.2=h50ea8bc_3' \ + 'bash' \ + 'coreutils' \ + 'findutils' \ + 'gawk' \ + 'grep' \ + 'procps-ng' \ + 'time' \ + 'util-linux' \ + 'which' RUN \ - conda clean -yaf + conda clean -yaf # Move Conda environment into distroless image FROM gcr.io/distroless/base-debian11:latest @@ -38,6 +38,6 @@ ENV LD_LIBRARY_PATH="/env/lib/:${LD_LIBRARY_PATH}" # Symlink system executables as required by VIRUSBreaked SHELL ["/env/bin/bash", "-c"] RUN \ - ln -s /env/bin/bash /bin/bash && \ - ln -s /env/bin/env /usr/bin/env && \ - ln -s /env/bin/time /usr/bin/time + ln -s /env/bin/bash /bin/bash && \ + ln -s /env/bin/env /usr/bin/env && \ + ln -s /env/bin/time /usr/bin/time