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fix-linting.yml
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Set bwa-mem2 batch size for reproducibility Fix linting from a comment #39: Issue comment #21 (comment) created by scwatts
May 7, 2024 05:19 2s
May 7, 2024 05:19 2s
virusbreakend gridsscache file exists Fix linting from a comment #38: Issue comment #22 (comment) created by scwatts
May 7, 2024 04:06 3s
May 7, 2024 04:06 3s
virusbreakend gridsscache file exists Fix linting from a comment #37: Issue comment #22 (comment) created by iagooteroc
May 6, 2024 11:43 2s
May 6, 2024 11:43 2s
virusbreakend gridsscache file exists Fix linting from a comment #36: Issue comment #22 (comment) created by scwatts
May 6, 2024 10:34 2s
May 6, 2024 10:34 2s
virusbreakend gridsscache file exists Fix linting from a comment #35: Issue comment #22 (comment) created by iagooteroc
May 6, 2024 10:03 1s
May 6, 2024 10:03 1s
virusbreakend gridsscache file exists Fix linting from a comment #34: Issue comment #22 (comment) created by scwatts
May 6, 2024 09:50 3s
May 6, 2024 09:50 3s
virusbreakend gridsscache file exists Fix linting from a comment #33: Issue comment #22 (comment) created by iagooteroc
May 6, 2024 08:29 3s
May 6, 2024 08:29 3s
virusbreakend gridsscache file exists Fix linting from a comment #32: Issue comment #22 (comment) created by scwatts
May 6, 2024 08:17 2s
May 6, 2024 08:17 2s
virusbreakend gridsscache file exists Fix linting from a comment #31: Issue comment #22 (comment) created by iagooteroc
May 6, 2024 08:11 2s
May 6, 2024 08:11 2s
virusbreakend gridsscache file exists Fix linting from a comment #30: Issue comment #22 (comment) created by scwatts
May 6, 2024 07:53 2s
May 6, 2024 07:53 2s
Linting in nf-core tools appears to require that params are set in nextflow.config and nextflow_schema.json Fix linting from a comment #29: Issue comment #10 (comment) created by scwatts
May 3, 2024 05:35 2s
May 3, 2024 05:35 2s
Mistake in example sample sheet Fix linting from a comment #28: Issue comment #17 (comment) created by scwatts
April 30, 2024 09:44 2s
April 30, 2024 09:44 2s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #27: Issue comment #13 (comment) created by scwatts
April 28, 2024 23:24 1s
April 28, 2024 23:24 1s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #26: Issue comment #13 (comment) created by PFRoux
April 26, 2024 10:23 2s
April 26, 2024 10:23 2s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #25: Issue comment #13 (comment) created by scwatts
April 25, 2024 23:24 2s
April 25, 2024 23:24 2s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #24: Issue comment #13 (comment) created by PFRoux
April 24, 2024 12:25 2s
April 24, 2024 12:25 2s
Implement alignment subworkflow Fix linting from a comment #23: Issue comment #6 (comment) created by scwatts
April 23, 2024 07:49 2s
April 23, 2024 07:49 2s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #22: Issue comment #13 (comment) created by scwatts
April 11, 2024 10:48 2s
April 11, 2024 10:48 2s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #21: Issue comment #13 (comment) created by PFRoux
April 11, 2024 08:52 2s
April 11, 2024 08:52 2s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #20: Issue comment #13 (comment) created by scwatts
April 10, 2024 08:39 2s
April 10, 2024 08:39 2s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #19: Issue comment #13 (comment) created by PFRoux
April 10, 2024 07:04 2s
April 10, 2024 07:04 2s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #18: Issue comment #13 (comment) created by scwatts
April 9, 2024 00:00 2s
April 9, 2024 00:00 2s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #17: Issue comment #13 (comment) created by PFRoux
April 8, 2024 11:51 2s
April 8, 2024 11:51 2s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #16: Issue comment #13 (comment) created by scwatts
April 5, 2024 08:28 22s
April 5, 2024 08:28 22s
Missing output file(s) WGS_20M_A375.gridss.vcf.gz expected by process NFCORE_ONCOANALYSER:WGTS:GRIDSS_SVPREP_CALLING:DEPTH_ANNOTATOR (WGS_20M_A375) Fix linting from a comment #15: Issue comment #13 (comment) created by PFRoux
April 5, 2024 07:13 4s
April 5, 2024 07:13 4s