TRIM_READS error

[aperreault]

Description of the bug

I get the following error when I run this command: NXF_VER=23.10.1 nextflow run nf-core/hic -profile docker --input /media/aunderwood6/BCSP-extra/MCF7/HIC_MCF7_708.csv --genome GRCh38 --digestion mboi --outdir /media/aunderwood6/BCSP-extra/MCF7/HiC-analysis/HIC_MCF7_708

[nf-core/hic] Pipeline completed with errors- 
ERROR ~ Error executing process > 'NFCORE_HIC:HIC:HICPRO:HICPRO_MAPPING:TRIM_READS (HIC_MCF7_708)' 

Caused by:
  Process `NFCORE_HIC:HIC:HICPRO:HICPRO_MAPPING:TRIM_READS (HIC_MCF7_708)` terminated with an error exit status (1) 

Command executed: 
  zcat HIC_MCF7_708_0_R2.unmapped.fastq.gz > tmp.fastq 
  cutsite_trimming --fastq tmp.fastq \ 
      --cutsite AAGCTAGCTT \ 
      --out HIC_MCF7_708_0_R2_trimmed.fastq 
  gzip HIC_MCF7_708_0_R2_trimmed.fastq 
  /bin/rm -f tmp.fastq 

  cat <<-END_VERSIONS > versions.yml 
  "NFCORE_HIC:HIC:HICPRO:HICPRO_MAPPING:TRIM_READS": 
      gzip: $(echo $(gzip --version 2>&1) | head -1 | cut -d" " -f2) 
  END_VERSIONS 

Command exit status: 1 

Command output: 
  ##Fastq file: tmp.fastq 
  ##Restriction sites (n=1): 
  AAGCTAGCTT 
  ##Output File: HIC_MCF7_708_0_R2_trimmed.fastq 
  ##Trimmed reads: 1905 

Command error: 
  ##Fastq file: tmp.fastq 
  ##Restriction sites (n=1): 
  AAGCTAGCTT 
  ##Output File: HIC_MCF7_708_0_R2_trimmed.fastq 

  ##Trimmed reads: 1905 
  gzip: HIC_MCF7_708_0_R2_trimmed.fastq: Input/output error 

The restriction site in the error is correct, but there is no ^ to designate cut site. Is that the issue?

Thanks!

Command used and terminal output

Relevant files

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System information

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