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Allow CRAM as input format #9

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FriederikeHanssen opened this issue Sep 1, 2020 · 0 comments · Fixed by #36
Closed

Allow CRAM as input format #9

FriederikeHanssen opened this issue Sep 1, 2020 · 0 comments · Fixed by #36

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@FriederikeHanssen
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the genomes from 1000genomes consortium are partially only available as CRAMS. It would be useful to allow conversion of them as well. This would require a bit of rewriting of the output channels (i.e. change *.bam) as well as determining how to run FastQC with this input. (see issue: s-andrews/FastQC#54)
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Add support for CRAM files
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@FriederikeHanssen