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DESCRIPTION
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Package: RaMP
Title: RaMP (Relational Database of Metabolomic Pathways)
Type: Package
Version: 3.0.2
License: GPL-2
Depends: R (>= 3.6.0)
Authors@R: c(
person("John", "Braisted", email = "[email protected]", role = "aut"),
person("Ewy", "Mathe", email = "[email protected]", role = c("aut", "cre")),
person("Andrew", "Patt", email = "[email protected]", role = "aut"),
person("Kyle", "Spencer", email = "[email protected]", rol="aut"),
person("Cole", "Tindall", email = "[email protected]", role = "aut"))
Description: The RaMP R package allows users to interact with the RaMP database, which integrates biological, reaction-level, ontologies, and chemical annoations from multiple resources (Reactome, HMDB, WikiPathways, KEGG, LipidMAPS, ChEBI). The package allows users to query RaMP and to perform pathway and chemical overrepresentation analyses.
Imports:
magrittr,
shiny,
methods,
shinydashboard,
highcharter,
dplyr,
ggplot2,
plotly,
tidyr,
tidytext,
data.table,
DT,
rlang,
gt,
xtable,
visNetwork,
properties,
stringi,
DBI,
RSQLite,
RMariaDB,
jsonlite,
readxl,
tibble,
BiocFileCache,
R.utils,
httr,
upsetjs,
Polychrome
Encoding: UTF-8
RoxygenNote: 7.3.1
Suggests:
testthat (>= 3.0.0)
Config/testthat/edition: 3