From 6a94d41ca48602703a039d0bf9f2f9dd5bf57df6 Mon Sep 17 00:00:00 2001 From: johnbraisted Date: Fri, 8 Mar 2024 09:21:04 -0500 Subject: [PATCH] update config for new wikipathway url format --- config/external_resource_config.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config/external_resource_config.txt b/config/external_resource_config.txt index 07f4ae9..3af4ca3 100644 --- a/config/external_resource_config.txt +++ b/config/external_resource_config.txt @@ -4,7 +4,7 @@ hmdb_gene http https://hmdb.ca/system/downloads/current/hmdb_proteins.zip hmdb_p hmdb_met_sdf http https://hmdb.ca/system/downloads/current/structures.zip structures.zip structures.sdf ../misc/data/chemprops/hmdb/ zip chem_props_sdf reactome_met http http://www.reactome.org/download/current/ChEBI2Reactome_All_Levels.txt ChEBI2Reactome_All_Levels.txt ChEBI2Reactome_All_Levels.txt ../misc/data/reactome/ none pathways_mets reactome_gene http http://www.reactome.org/download/current/UniProt2Reactome_All_Levels.txt UniProt2Reactome_All_Levels.txt UniProt2Reactome_All_Levels.txt ../misc/data/reactome/ none pathways_genes -wiki_pathways_mets_genes http https://wikipathways-data.wmcloud.org/current/rdf/wikipathways-20240210-rdf-wp.zip wikipathways-20240210-rdf-wp.zip ./wp/ ../misc/data/wikipathwaysRDF/ zip pathways_mets_genes +wiki_pathways_mets_genes http https://data.wikipathways.org/20240210/rdf/wikipathways-20240210-rdf-authors.zip wikipathways-20240210-rdf-authors.zip ./authors/ ../misc/data/wikipathwaysRDF/ zip pathways_mets_genes chebi_met_sdf ftp https://ftp.ebi.ac.uk/pub/databases/chebi/SDF/ChEBI_complete_3star.sdf.gz ChEBI_complete_3star.sdf.gz ChEBI_complete_3star.sdf ../misc/data/chemprops/chebi/ gzip chem_props_sdf lipidmaps_met http https://www.lipidmaps.org/files/?file=LMSD&ext=sdf.zip LMSD.sdf.zip structures.sdf ../misc/data/chemprops/lipidmaps/ zip chem_props_sdf swissprot_human http https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/uniprot_sprot_human.dat.gz uniprot_sprot_human.dat.gz uniprot_sprot_human.dat ../misc/data/uniprot_human/ gzip proteins