From 43670c262e9df5adf3a7c54012a539c55802d77c Mon Sep 17 00:00:00 2001 From: luc Date: Mon, 27 Jan 2025 13:32:22 -0500 Subject: [PATCH] Update stats_by_project_dag.py --- stats_by_project_dag.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/stats_by_project_dag.py b/stats_by_project_dag.py index 371ebf5..5c402ad 100644 --- a/stats_by_project_dag.py +++ b/stats_by_project_dag.py @@ -96,7 +96,7 @@ def run_stats(ds, **kwargs): print(cmd) subprocess.run(cmd, shell=True) - elif "SC_Chromium" in recipe: + elif "SC_Chromium" in recipe or "ST_Visium" in recipe: scripts.cellranger.launch_cellranger_by_project_location(project_directory, recipe, species) elif "Nanopore" in recipe: cmd = "bsub -J ont_stats_{} -n 16 -M 16 /igo/work/nabors/tools/venvpy3/bin/python /igo/work/igo/igo-demux/scripts/ont_stats.py {}".format(project_id, project_directory)