From f39ce80b7c3e1e234cb6ce2d9a7d0c92dc4bf98e Mon Sep 17 00:00:00 2001
From: r-ash <39248272+r-ash@users.noreply.github.com>
Date: Thu, 5 Dec 2024 21:04:24 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20mrc-ide/?=
=?UTF-8?q?naomi@c71c907374ea710f971904f98526ef33b6a724a8=20=F0=9F=9A=80?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
---
404.html | 2 +-
LICENSE-text.html | 2 +-
LICENSE.html | 2 +-
articles/data-model.html | 2 +-
articles/index.html | 2 +-
articles/model-workflow.html | 2 +-
authors.html | 6 +++---
index.html | 2 +-
news/index.html | 6 +++++-
pkgdown.yml | 2 +-
reference/Imports.html | 2 +-
reference/add_output_labels.html | 2 +-
reference/age_bar_plotly.html | 2 +-
reference/aggregate_anc.html | 2 +-
reference/aggregate_art.html | 2 +-
reference/align_inputs_outputs.html | 2 +-
reference/anc_testing_prev_mf.html | 2 +-
reference/artnum_mf.html | 2 +-
reference/assert_pjnz_shiny90.html | 2 +-
reference/bar_plotly.html | 2 +-
reference/build_hierarchy_label.html | 2 +-
reference/cache_invariant.html | 2 +-
reference/calculate_prevalence_art_coverage.html | 2 +-
reference/calibrate_outputs.html | 2 +-
reference/cmc_date.html | 2 +-
reference/create_adj_matrix.html | 2 +-
reference/create_area_aggregation.html | 2 +-
reference/create_areas.html | 2 +-
reference/create_edge_list.html | 2 +-
reference/cut_naomi_age_group.html | 2 +-
reference/data_type_labels.html | 2 +-
reference/demo_anc_testing.html | 2 +-
reference/demo_area_boundaries.html | 2 +-
reference/demo_area_hierarchy.html | 2 +-
reference/demo_area_levels.html | 2 +-
reference/demo_population_agesex.html | 2 +-
reference/demo_survey_biomarker.html | 2 +-
reference/demo_survey_clusters.html | 2 +-
reference/demo_survey_hiv_indicators.html | 2 +-
reference/demo_survey_individuals.html | 2 +-
reference/demo_survey_meta.html | 2 +-
reference/demo_survey_regions.html | 2 +-
reference/disaggregate_0to4_outputs.html | 2 +-
reference/district_barplot.html | 2 +-
reference/dropdown_buttons.html | 2 +-
reference/extract_pjnz_naomi.html | 2 +-
reference/extract_pjnz_program_data.html | 2 +-
reference/extract_shiny90_age_sex.html | 2 +-
reference/fit_tmb.html | 2 +-
reference/generate_comparison_report.html | 2 +-
reference/generate_output_summary_report.html | 2 +-
reference/get_age_group_out.html | 2 +-
reference/get_age_groups.html | 2 +-
reference/get_anc_metadata.html | 2 +-
reference/get_area_collection.html | 2 +-
reference/get_art_metadata.html | 2 +-
reference/get_colour_scale.html | 2 +-
reference/get_five_year_age_groups.html | 2 +-
reference/get_meta_indicator.html | 2 +-
reference/get_metadata.html | 2 +-
reference/get_plot_type_column_metadata.html | 2 +-
reference/get_plotting_metadata.html | 2 +-
reference/get_spec_aggr_interpolation.html | 2 +-
reference/hintr_calibrate.html | 2 +-
reference/hintr_calibrate_plot.html | 2 +-
reference/hintr_comparison_plot.html | 2 +-
reference/hintr_prepare_agyw_download.html | 2 +-
reference/hintr_prepare_coarse_age_group_download.html | 2 +-
reference/hintr_prepare_comparison_report_download.html | 2 +-
reference/hintr_prepare_spectrum_download.html | 2 +-
reference/hintr_prepare_summary_report_download.html | 2 +-
reference/hintr_run_model.html | 2 +-
reference/hintr_validate_programme_data.html | 2 +-
reference/index.html | 2 +-
reference/interpolate_population_agesex.html | 2 +-
reference/log_linear_interp.html | 2 +-
reference/map_outputs.html | 2 +-
reference/naomi_model_frame.html | 2 +-
reference/naomi_objective_function_r.html | 2 +-
reference/naomi_output_frame.html | 2 +-
reference/output_naomi_warning.html | 2 +-
reference/output_package.html | 2 +-
reference/pipe.html | 2 +-
reference/pop_pyramid_outputs.html | 2 +-
reference/prepare_anc_spectrum_comparison.html | 2 +-
reference/prepare_art_spectrum_comparison.html | 2 +-
reference/prepare_input_time_series_anc.html | 2 +-
reference/prepare_input_time_series_art.html | 2 +-
reference/prepare_spectrum_naomi_comparison.html | 2 +-
reference/prepare_tmb_inputs.html | 2 +-
reference/programme_data_warning.html | 2 +-
reference/quarter_year_labels.html | 2 +-
reference/read_csv_partial_cols.html | 2 +-
reference/read_hintr_output.html | 2 +-
reference/read_metadata.html | 2 +-
reference/read_population.html | 2 +-
reference/read_spectrum_projection_name.html | 2 +-
reference/read_spectrum_region_code.html | 2 +-
reference/read_spectrum_region_name.html | 2 +-
reference/report_tmb.html | 2 +-
reference/sample_tmb.html | 2 +-
reference/save_output.html | 2 +-
reference/save_output_package.html | 2 +-
reference/scale_gmrf_precision.html | 2 +-
reference/scatter_plotly.html | 2 +-
reference/sdreport_joint_precision.html | 2 +-
reference/select_naomi_data.html | 2 +-
reference/spread_areas.html | 2 +-
reference/subset_naomi_output.html | 2 +-
reference/subset_output_package.html | 2 +-
reference/survey_mf.html | 2 +-
reference/tag_data_inputs.html | 2 +-
reference/th_map.html | 2 +-
reference/validate_model_options.html | 2 +-
reference/write_datapack_csv.html | 2 +-
reference/write_navigator_checklist.html | 2 +-
116 files changed, 122 insertions(+), 118 deletions(-)
diff --git a/404.html b/404.html
index f6860592..9ca620cc 100644
--- a/404.html
+++ b/404.html
@@ -32,7 +32,7 @@
naomi
- 2.10.3
+ 2.10.4
diff --git a/LICENSE-text.html b/LICENSE-text.html
index fbf783c9..3d07cf49 100644
--- a/LICENSE-text.html
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@@ -17,7 +17,7 @@
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+ 2.10.4
diff --git a/LICENSE.html b/LICENSE.html
index 0525c573..692bec39 100644
--- a/LICENSE.html
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@@ -17,7 +17,7 @@
naomi
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+ 2.10.4
diff --git a/articles/data-model.html b/articles/data-model.html
index bea47dad..458368e2 100644
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@@ -32,7 +32,7 @@
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+ 2.10.4
diff --git a/articles/index.html b/articles/index.html
index d85b1a24..f363461b 100644
--- a/articles/index.html
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@@ -17,7 +17,7 @@
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+ 2.10.4
diff --git a/articles/model-workflow.html b/articles/model-workflow.html
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diff --git a/authors.html b/authors.html
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--- a/authors.html
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@@ -17,7 +17,7 @@
naomi
- 2.10.3
+ 2.10.4
@@ -70,13 +70,13 @@
Citation
Eaton J (2024).
naomi: Naomi Model for Subnational HIV Estimates.
-R package version 2.10.3.
+R package version 2.10.4.
@Manual{,
title = {naomi: Naomi Model for Subnational HIV Estimates},
author = {Jeff Eaton},
year = {2024},
- note = {R package version 2.10.3},
+ note = {R package version 2.10.4},
}
diff --git a/index.html b/index.html
index 782e218b..71e6b424 100644
--- a/index.html
+++ b/index.html
@@ -33,7 +33,7 @@
naomi
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+ 2.10.4
diff --git a/news/index.html b/news/index.html
index b539d3c3..22f67571 100644
--- a/news/index.html
+++ b/news/index.html
@@ -17,7 +17,7 @@
naomi
- 2.10.3
+ 2.10.4
@@ -54,6 +54,10 @@ Changelog
+
+
+
- If users upload multiple quarters in ART programme data, return only the last quarter per year for input comparison data. This fixes a bug where previously they were being aggregated. issue-3 24/25
+
- Return
anc_already_art
, anc_status
, anc_art_among_known
and anc_total_pos
indicators from ANC input time series data.
diff --git a/pkgdown.yml b/pkgdown.yml
index 8555e368..49108f97 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -4,4 +4,4 @@ pkgdown_sha: ~
articles:
data-model: data-model.html
model-workflow: model-workflow.html
-last_built: 2024-12-04T15:19Z
+last_built: 2024-12-05T21:03Z
diff --git a/reference/Imports.html b/reference/Imports.html
index aaf57816..c04cc45e 100644
--- a/reference/Imports.html
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@@ -20,7 +20,7 @@
naomi
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diff --git a/reference/add_output_labels.html b/reference/add_output_labels.html
index 866b60dc..c6605cc2 100644
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diff --git a/reference/age_bar_plotly.html b/reference/age_bar_plotly.html
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naomi
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+ 2.10.4
diff --git a/reference/aggregate_anc.html b/reference/aggregate_anc.html
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+ 2.10.4
diff --git a/reference/aggregate_art.html b/reference/aggregate_art.html
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diff --git a/reference/align_inputs_outputs.html b/reference/align_inputs_outputs.html
index c0cd9231..49428207 100644
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naomi
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index 23b7c25d..6df7eedd 100644
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@@ -17,7 +17,7 @@
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diff --git a/reference/artnum_mf.html b/reference/artnum_mf.html
index 16a6e89a..6640919a 100644
--- a/reference/artnum_mf.html
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@@ -17,7 +17,7 @@
naomi
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+ 2.10.4
diff --git a/reference/assert_pjnz_shiny90.html b/reference/assert_pjnz_shiny90.html
index 20b95295..667d4b2e 100644
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@@ -17,7 +17,7 @@
naomi
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diff --git a/reference/bar_plotly.html b/reference/bar_plotly.html
index 6e90835a..d86afb39 100644
--- a/reference/bar_plotly.html
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naomi
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+ 2.10.4
diff --git a/reference/build_hierarchy_label.html b/reference/build_hierarchy_label.html
index f4309838..512916d8 100644
--- a/reference/build_hierarchy_label.html
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@@ -17,7 +17,7 @@
naomi
- 2.10.3
+ 2.10.4
diff --git a/reference/cache_invariant.html b/reference/cache_invariant.html
index a0055976..6920d98a 100644
--- a/reference/cache_invariant.html
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naomi
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+ 2.10.4
diff --git a/reference/calculate_prevalence_art_coverage.html b/reference/calculate_prevalence_art_coverage.html
index 4903341d..52dda938 100644
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@@ -17,7 +17,7 @@
naomi
- 2.10.3
+ 2.10.4
diff --git a/reference/calibrate_outputs.html b/reference/calibrate_outputs.html
index d0e54211..776a2b14 100644
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naomi
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+ 2.10.4
diff --git a/reference/cmc_date.html b/reference/cmc_date.html
index 5965107c..d650092e 100644
--- a/reference/cmc_date.html
+++ b/reference/cmc_date.html
@@ -17,7 +17,7 @@
naomi
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+ 2.10.4
diff --git a/reference/create_adj_matrix.html b/reference/create_adj_matrix.html
index b1fc0916..94caffaa 100644
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naomi
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diff --git a/reference/create_area_aggregation.html b/reference/create_area_aggregation.html
index 5a585e77..18e8d688 100644
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naomi
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diff --git a/reference/create_areas.html b/reference/create_areas.html
index 2b7993dc..1b37a0d5 100644
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naomi
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+ 2.10.4
diff --git a/reference/create_edge_list.html b/reference/create_edge_list.html
index 86a960fe..630669f0 100644
--- a/reference/create_edge_list.html
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index 155a46c5..70cde336 100644
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diff --git a/reference/demo_area_boundaries.html b/reference/demo_area_boundaries.html
index af0bece2..f8c2f697 100644
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@@ -17,7 +17,7 @@
naomi
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+ 2.10.4
diff --git a/reference/demo_area_hierarchy.html b/reference/demo_area_hierarchy.html
index 199c465a..da30e20c 100644
--- a/reference/demo_area_hierarchy.html
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naomi
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diff --git a/reference/demo_area_levels.html b/reference/demo_area_levels.html
index e891041d..ba922540 100644
--- a/reference/demo_area_levels.html
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naomi
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+ 2.10.4
diff --git a/reference/demo_population_agesex.html b/reference/demo_population_agesex.html
index d154cfb9..aff91f2c 100644
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naomi
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diff --git a/reference/demo_survey_biomarker.html b/reference/demo_survey_biomarker.html
index 490e030a..6c4dda47 100644
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index 809fab56..71ccbf37 100644
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diff --git a/reference/demo_survey_meta.html b/reference/demo_survey_meta.html
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naomi
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diff --git a/reference/generate_comparison_report.html b/reference/generate_comparison_report.html
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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naomi
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