From a2c56927fe152cca2d4777c4e8b5c9a1d12e6d78 Mon Sep 17 00:00:00 2001
From: kdelange <kimatwork01@gmail.com>
Date: Fri, 8 Dec 2023 15:24:30 +0100
Subject: [PATCH 1/2] eb file for new NGS_Demultiplexing

---
 .../NGS_Demultiplexing-2.5.4.eb               | 33 +++++++++++++++++++
 1 file changed, 33 insertions(+)
 create mode 100644 n/NGS_Demultiplexing/NGS_Demultiplexing-2.5.4.eb

diff --git a/n/NGS_Demultiplexing/NGS_Demultiplexing-2.5.4.eb b/n/NGS_Demultiplexing/NGS_Demultiplexing-2.5.4.eb
new file mode 100644
index 0000000..fcf6f18
--- /dev/null
+++ b/n/NGS_Demultiplexing/NGS_Demultiplexing-2.5.4.eb
@@ -0,0 +1,33 @@
+name = 'NGS_Demultiplexing'
+version = '2.5.4'
+namelower = name.lower()
+
+homepage = 'https://github.com/molgenis/molgenis-pipelines'
+description = """This distribution already contains several pipelines/protocols/parameter files which you can use 'out-of-the-box' to align and impute your NGS data using MOLGENIS Compute."""
+
+toolchain = SYSTEM 
+easyblock = 'Tarball'
+
+#dependencies
+dependencies = [
+    ('Molgenis-Compute','20.03.1', '-Java-11-LTS'),
+    ('PerlPlus', '5.34.1', '-v22.11.1',('GCCcore','11.3.0')),
+    ('interop', '1.2.0', '', ('foss', '2022a')),
+    ('bcl2fastq2', '2.20.0', '', ('GCC', '11.3.0')),
+]
+
+#
+# Example URL: https://github.com/molgenis/NGS_Demultiplexing/archive/2.6.1.tar.gz
+#
+#
+source_urls = [('http://github.com/molgenis/%s/archive/' % (name))]
+sources = [('%s.tar.gz' % (version))]
+
+checksums = ['4f4e11782fc34ef6349c12100a9908455f303ae2990fbc5c5d8c9143aeefe682']
+
+sanity_check_paths = {
+    'files': ['workflow.csv', 'parameters.csv'],
+    'dirs': []
+}
+
+moduleclass = 'bio'

From d3c3f38b9822458df77c026bcb45d14ce8852ebb Mon Sep 17 00:00:00 2001
From: kdelange <kimatwork01@gmail.com>
Date: Tue, 12 Dec 2023 10:08:44 +0100
Subject: [PATCH 2/2] small update eb file NGS_Demultiplexing

---
 n/NGS_Demultiplexing/NGS_Demultiplexing-2.5.4.eb | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/n/NGS_Demultiplexing/NGS_Demultiplexing-2.5.4.eb b/n/NGS_Demultiplexing/NGS_Demultiplexing-2.5.4.eb
index fcf6f18..9699c69 100644
--- a/n/NGS_Demultiplexing/NGS_Demultiplexing-2.5.4.eb
+++ b/n/NGS_Demultiplexing/NGS_Demultiplexing-2.5.4.eb
@@ -2,8 +2,8 @@ name = 'NGS_Demultiplexing'
 version = '2.5.4'
 namelower = name.lower()
 
-homepage = 'https://github.com/molgenis/molgenis-pipelines'
-description = """This distribution already contains several pipelines/protocols/parameter files which you can use 'out-of-the-box' to align and impute your NGS data using MOLGENIS Compute."""
+homepage = 'https://github.com/molgenis/NGS_Demultiplexing'
+description = """Next Generation Sequencing data processing using the inhouse pipeline for Bcl To FastQ conversion, demultiplexing and standardized filename convertion."""
 
 toolchain = SYSTEM 
 easyblock = 'Tarball'